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chore: cleanup r"""
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aalexmmaldonado committed May 20, 2024
1 parent 4a107d5 commit ba3bf71
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions subpex/pocket/detect.py
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ def get_fop_pocket(
clustering_model: type | None = None,
clustering_kwargs: MutableMapping[str, Any] | None = None,
) -> Sequence[Sequence[float]]:
r"""Calculate the field of points (FOP) for a pocket.
"""Calculate the field of points (FOP) for a pocket.
This function generates a field of points (FOP) representing the shape
of a pocket using the provided protein and alpha carbon coordinates.
Expand Down Expand Up @@ -82,7 +82,7 @@ def get_fop_pocket_convenience(
*args: Any,
**kwargs: Any,
) -> Sequence[Sequence[float]]:
r"""Convenience function for getting the FOP for a pocket.
"""Convenience function for getting the FOP for a pocket.
This function simplifies the process of calculating the field of points
(FOP) for a pocket using a simulation frame and the SuPEx configuration.
Expand Down Expand Up @@ -114,7 +114,7 @@ def get_fop_pocket_convenience(
def get_residues_in_pocket(
u: mda.Universe, center: Sequence[float], radius: float, resnames: Sequence[str]
) -> mda.AtomGroup:
r"""Get residues within the pocket.
"""Get residues within the pocket.
Args:
u: MDAnalysis universe containing the protein.
Expand All @@ -137,7 +137,7 @@ def get_pocket_selection(
water_resnames: Sequence[str] = ["WAT", "HOH", "H2O"],
selection_append: str = "and (not name H*)",
) -> str:
r"""Get the initial selection of the pocket based on the specified radius.
"""Get the initial selection of the pocket based on the specified radius.
This function identifies the initial selection of pocket residues based
on a user-specified radius, and optionally considers distance from water molecules
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