segment any organoid (SAO)

Xuan Du ^1,3,  YuChen Li^1,3,  Jiaping Song⁴,  Zilin Zhang¹,  Jing Zhang⁴,  Yanhui Li^2*,  Zaozao Chen^1*,  Zhongze Gu^1*, 

¹ Southeast University  ² Nanjing University  ³ Avatarget Biotechnology Co. 
⁴ Anhui Science and Technology University 

     

Sample_1	Sample_2	Sample_3
:------------------------------:	:-------------------------------:	:-------------------------------:

This repo is the official implementation of "[**Segment any organoid**](https://www.researchgate.net/publication/384542893_Segment_Any_Organoid_A_Generalist_Algorithm_for_High-Throughput_Drug_Screening_of_Organoid)".

Documentation 📑

This is about the organoid/organ-on-a-chip intelligent segmentation algorithm. The code will be released soon.

Usage

Environment Setup

pip install -r requirements.txt

Dataset Preparation

Traning