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  1. Personal-Collection Personal-Collection Public

    Learning how to implement different algorithms

    Jupyter Notebook

  2. Microbiome-Factorization Microbiome-Factorization Public

    Examples of using PhyloFactor and DEICODE to analyze microbiome datasets.

    Jupyter Notebook 1 1

  3. saezlab/ccc_protocols saezlab/ccc_protocols Public

    LIANA x Tensor-cell2cell Protocols

    Jupyter Notebook 1 3

  4. cell2cell cell2cell Public

    User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

    Python 57 12

  5. LewisLabUCSD/Ligand-Receptor-Pairs LewisLabUCSD/Ligand-Receptor-Pairs Public

    Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.

    122 34

  6. scCellFie scCellFie Public

    scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integr…

    Python 1