-
Notifications
You must be signed in to change notification settings - Fork 8
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Added license, contributing, and funding
- Loading branch information
1 parent
e195753
commit fb78ae1
Showing
3 changed files
with
465 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,37 @@ | ||
# EDAM-bioimaging | ||
|
||
An ontology of bioimage informatics operations, types of data, data formats, and bioimaging topics | ||
|
||
Please see README.md for more details, including viewing and download. | ||
|
||
|
||
|
||
## Contributing | ||
|
||
This is an open community project (transparent and participatory), and thus contributions are very welcome! | ||
|
||
The most accessible way of contributing is writing comments with suggestions or needs for clarification, and starting discussion threads. Multiple channels are avaialable: | ||
|
||
**Preferred:** | ||
* Add comments to the [live development version of EDAM-bioimaging](https://webprotege.stanford.edu/#projects/2ce704bf-83ed-4d2e-985f-84c4841fac71/edit/Classes) at __WebProtégé__. Free registration at WebProtégé is required. Select a concept and "Start new thread" in the "Comments" widget|window (not "Comments" tab, stay in the "Classes" tab). Contribute to already open threads _ibid_ or in the "Comments" tab. | ||
|
||
**Other options:** | ||
* Add a proposal or comment to EDAM-bioimaging at the __NCBO BioPortal__ | ||
* to a selected concept in the ["Classes" tab](https://bioportal.bioontology.org/ontologies/EDAM-BIOIMAGING/?p=classes) by clicking the small "Notes" tab on the right (still within the big "Classes" tab) | ||
* on the general level in the ["Notes" tab](https://bioportal.bioontology.org/ontologies/EDAM-BIOIMAGING/?p=notes). You can include new concept proposals here. | ||
* Submit or comment on an [issue](https://github.com/edamontology/edam-bioimaging/issues) at __GitHub__ | ||
* Join the discussions at [email protected]. Mostly organisational stuff. | ||
* Add comments to the stable versions of EDAM-bioimaging at WebProtégé, such as the [last stable version](https://webprotege.stanford.edu/#projects/60fbe82b-bd58-41e2-825d-3801c071ee47/edit/Classes) and especially the frozen versions ([alpha03](https://webprotege.stanford.edu/#projects/40a89525-b6d6-42f2-a4c1-88e7fb1c1f86/edit/Classes), [alpha02](https://webprotege.stanford.edu/#projects/f2cd721e-0f26-4b05-9ce2-ce20d4860442/edit/Classes)) for more persistent comments. Note that comments to the [live version](https://webprotege.stanford.edu/#projects/2ce704bf-83ed-4d2e-985f-84c4841fac71/edit/Classes) are handled with the highest priority. | ||
|
||
If you want to contribute in person, please join or organise a hackathon. Get in touch with [email protected] or [email protected] for planning. Usual hackathons for editing EDAM-bioimaging are the [NEUBIAS Taggathons](http://eubias.org/NEUBIAS/what-is-taggathon/). | ||
|
||
|
||
## Editing | ||
|
||
At this momentary early stage of the development, the content of EDAM-bioimaging is developed collaboratively at http://webprotege.stanford.edu/#projects/2ce704bf-83ed-4d2e-985f-84c4841fac71/edit/Classes. After one dev cycle, these developments are commited in a batch to _git_. _Vice versa_, commits from _git_ are merged into WebProtégé. | ||
|
||
**_N.B._:** Due to this special setup, edit either: | ||
* in only _git_ or in only WebProtégé and merge afterwards | ||
* or if needed in parallel, edit properties and root concepts only in _git_ and other concepts only in WebProtégé. Merge afterwards. | ||
|
||
**_N.B._:** Be aware of how IDs of new concepts are assigned, and what it means for both **merging into _git_** and **[Comments](https://webprotege.stanford.edu/#projects/2ce704bf-83ed-4d2e-985f-84c4841fac71/edit/Comments) in WebProtégé**. See https://github.com/edamontology/edam-bioimaging/issues/7. |
Oops, something went wrong.