Update changelog, prepare for 0.5 (#163)

CHANGELOG.md

@@ -1,9 +1,21 @@
 # Change Log
 
-0.5
----
-TODO
+0.5 (2017-05-19)
+----------------
+Major update, a lot of code base rewritten.
 
+Most important changes:
+- revised syntax for model definition (esp. naming)
+- scheduler-independent parallelization interface (currently supports native & ipyparallel)
+- methods can now be run iteratively
+- persistence to .npy files
+- Bayesian optimization as a separate method
+- sampling in BOLFI
+- MCMC sampling using the No-U-Turn-Sampler (NUTS)
+- Result object for BOLFI
+- virtual vectorization of external operations
+
+See the updated notebooks and documentation for examples and details.
 
 0.3.1 (2017-01-31)
 ------------------

MANIFEST.in

@@ -0,0 +1 @@
+recursive-include elfi/examples/cpp *.txt *.cpp Makefile

README.md

@@ -56,7 +56,7 @@ Note that in some environments you may need to first install `numpy` with
 
 ### Optional dependencies
 
-- `graphviz` for drawing graphical models ([Graphviz](http://www.graphviz.org))
+- `graphviz` for drawing graphical models (needs [Graphviz](http://www.graphviz.org)), highly recommended
 
 
 ### Python 3

setup.py

@@ -8,6 +8,9 @@
 
 packages = ['elfi'] + ['elfi.' + p for p in find_packages('elfi')]
 
+# include C++ examples
+package_data = {'elfi.examples': ['cpp/Makefile', 'cpp/*.txt', 'cpp/*.cpp']}
+
 with open('requirements.txt', 'r') as f:
     requirements = f.read().splitlines()
 
@@ -23,6 +26,7 @@
     name='elfi',
     keywords='abc likelihood-free statistics',
     packages=packages,
+    package_data=package_data,
     version=__version__,
     author='ELFI authors',
     author_email='[email protected]',
@@ -38,9 +42,11 @@
 
     classifiers=['Programming Language :: Python :: 3.5',
                  'Topic :: Scientific/Engineering',
+                 'Topic :: Scientific/Engineering :: Artificial Intelligence',
                  'Topic :: Scientific/Engineering :: Bio-Informatics',
+                 'Topic :: Scientific/Engineering :: Mathematics',
                  'Operating System :: OS Independent',
-                 'Development Status :: 3 - Alpha',
+                 'Development Status :: 4 - Beta',
                  'Intended Audience :: Science/Research',
                  'License :: OSI Approved :: BSD License'],
     zip_safe = False)