Genomics Daily run #31
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| name: Genomics Daily run | |
| on: | |
| schedule: | |
| - cron: '0 6 * * *' | |
| workflow_dispatch: | |
| jobs: | |
| fetch-genomics-summary: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout first repository | |
| uses: actions/checkout@v3 | |
| with: | |
| path: github-page | |
| - name: Checkout second repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: emmecola/genomics-daily | |
| path: genomics-daily | |
| - name: Set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r genomics-daily/requirements.txt | |
| pip install -r genomics-daily/requirements_bot.txt | |
| - name: Run Python script and prepare summary | |
| env: | |
| ANTHROPIC_API_KEY: ${{ secrets.ANTHROPIC_API_KEY }} | |
| BSKY_USER: ${{ secrets.BSKY_USER }} | |
| BSKY_PASSWORD: ${{ secrets.BSKY_PASSWORD }} | |
| MASTODON_TOKEN: ${{ secrets.MASTODON_TOKEN }} | |
| MASTODON_INSTANCE: ${{ secrets.MASTODON_INSTANCE }} | |
| run: | | |
| CURRENT_DATE=$(date +"%d/%m/%y") | |
| PREVIOUS_DATE=$(date -d "yesterday" +"%y-%m-%d") | |
| cp github-page/genomics-daily/summary.md github-page/genomics-daily/archive/summary-$PREVIOUS_DATE.md | |
| python genomics-daily/genomics-daily.py genomics-daily/keywords.txt genomics-daily/journals.txt > github-page/genomics-daily/summary.md | |
| echo "" >> github-page/genomics-daily/summary.md | |
| echo "*Last update: $CURRENT_DATE*" >> github-page/genomics-daily/summary.md | |
| python genomics-daily/genomics-daily-bot.py github-page/genomics-daily/summary.md | |
| - name: Commit and push changes | |
| run: | | |
| cd github-page | |
| git config user.name github-actions | |
| git config user.email [email protected] | |
| git add --all | |
| git commit -m "Update daily genomics summary" | |
| git push |