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updated description in readme #120

Merged
merged 11 commits into from
Nov 26, 2024
20 changes: 16 additions & 4 deletions README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -16,15 +16,15 @@ knitr::opts_chunk$set(
)
```

## *{{ packagename }}*: An R package with tools for estimating vaccine effectiveness and vaccine related metrics <img src="man/figures/logo.png" align="right" width="130"/>
## *{{ packagename }}*: Tools for estimating vaccine effectiveness and vaccine related metrics <img src="man/figures/logo.png" align="right" width="130"/>

<!-- badges: start -->

[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/license/mit)
[![R-CMD-check](https://github.com/{{ gh_repo }}/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/{{ gh_repo }}/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/{{ gh_repo }}/branch/main/graph/badge.svg)](https://app.codecov.io/gh/{{ gh_repo }}?branch=main)
[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
[![lifecycle-experimental](https://raw.githubusercontent.com/reconverse/reconverse.github.io/master/images/badge-experimental.svg)](https://www.reconverse.org/lifecycle.html#concept)
[![lifecycle-maturing](https://raw.githubusercontent.com/reconverse/reconverse.github.io/master/images/badge-maturing.svg)](https://www.reconverse.org/lifecycle.html#concept)

<!-- badges: end -->

Expand All @@ -35,13 +35,25 @@ knitr::opts_chunk$set(

## Installation

The current development version of _{{ packagename }}_ can be installed from [GitHub](https://github.com/) using the `pak` package.
Our stable versions are released on CRAN, and can be installed using:

```r
install.packages("vaccineff", build_vignettes = TRUE)
```

The current development version of _{{ packagename }}_ can be installed from [GitHub](https://github.com/) using the `pak` package.

```{r, eval = FALSE}
if(!require("pak")) install.packages("pak")
pak::pak("{{ gh_repo }}")
```

Or using the `remotes` package
```{r, eval = FALSE }
if(!require("remotes")) install.packages("remotes")
remotes::install_github("{{ gh_repo }}")
```

## Quick start

```{r cleaning, include = FALSE, echo = TRUE}
Expand Down Expand Up @@ -104,7 +116,7 @@ Contributors to the project include:
**Authors**: [David Santiago Quevedo](https://github.com/davidsantiagoquevedo) and [Zulma M. Cucunubá](https://github.com/zmcucunuba) (maintainer)

**Contributors**:
[Geraldine Gómez](https://github.com/GeraldineGomez), [Pratik Gupte](https://github.com/pratikunterwegs), [Érika J. Cantor](https://github.com/ErikaCantor), [Santiago Loaiza](https://github.com/santilo9513), [Jaime A. Pavlich-Mariscal](https://github.com/jpavlich), [Hugo Gruson](https://github.com/Bisaloo), [Chris Hartgerink](https://github.com/chartgerink), [Felipe Segundo Abril-Bermúdez](https://github.com/fsabrilb)
[Geraldine Gómez](https://github.com/GeraldineGomez), [Pratik Gupte](https://github.com/pratikunterwegs), [Érika J. Cantor](https://github.com/ErikaCantor), [Santiago Loaiza](https://github.com/santilo9513), [Jaime A. Pavlich-Mariscal](https://github.com/jpavlich), [Hugo Gruson](https://github.com/Bisaloo), [Chris Hartgerink](https://github.com/chartgerink), [Felipe Segundo Abril-Bermúdez](https://github.com/fsabrilb), [Joshua W. Lambert](https://github.com/joshwlambert), [Julian Otero](https://github.com/jd-otero)


## Code of conduct
Expand Down
23 changes: 19 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@

## *vaccineff*: An R package with tools for estimating vaccine effectiveness and vaccine related metrics <img src="man/figures/logo.png" align="right" width="130"/>
## *vaccineff*: Tools for estimating vaccine effectiveness and vaccine related metrics <img src="man/figures/logo.png" align="right" width="130"/>

<!-- badges: start -->

Expand All @@ -11,7 +11,7 @@ coverage](https://codecov.io/gh/epiverse-trace/vaccineff/branch/main/graph/badge
[![Project Status: WIP – Initial development is in progress, but there
has not yet been a stable, usable release suitable for the
public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
[![lifecycle-experimental](https://raw.githubusercontent.com/reconverse/reconverse.github.io/master/images/badge-experimental.svg)](https://www.reconverse.org/lifecycle.html#concept)
[![lifecycle-maturing](https://raw.githubusercontent.com/reconverse/reconverse.github.io/master/images/badge-maturing.svg)](https://www.reconverse.org/lifecycle.html#concept)

<!-- badges: end -->

Expand All @@ -30,6 +30,12 @@ screening method will be included in future versions.

## Installation

Our stable versions are released on CRAN, and can be installed using:

``` r
install.packages("vaccineff", build_vignettes = TRUE)
```

The current development version of *vaccineff* can be installed from
[GitHub](https://github.com/) using the `pak` package.

Expand All @@ -38,6 +44,13 @@ if(!require("pak")) install.packages("pak")
pak::pak("epiverse-trace/vaccineff")
```

Or using the `remotes` package

``` r
if(!require("remotes")) install.packages("remotes")
remotes::install_github("epiverse-trace/vaccineff")
```

## Quick start

*vaccineff* provides a minimal cohort dataset that can be used to test
Expand Down Expand Up @@ -104,7 +117,7 @@ summary(ve)
plot(ve, type = "loglog")
```

<img src="man/figures/README-unnamed-chunk-2-1.png" width="100%" />
<img src="man/figures/README-unnamed-chunk-4-1.png" width="100%" />

## Package vignettes

Expand Down Expand Up @@ -137,7 +150,9 @@ Loaiza](https://github.com/santilo9513), [Jaime A.
Pavlich-Mariscal](https://github.com/jpavlich), [Hugo
Gruson](https://github.com/Bisaloo), [Chris
Hartgerink](https://github.com/chartgerink), [Felipe Segundo
Abril-Bermúdez](https://github.com/fsabrilb)
Abril-Bermúdez](https://github.com/fsabrilb), [Joshua W.
Lambert](https://github.com/joshwlambert), [Julian
Otero](https://github.com/jd-otero)

## Code of conduct

Expand Down
Binary file added man/figures/README-unnamed-chunk-4-1.png
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