Merge pull request #5 from emaposse/REPORT-104

DSD-DENOMINATOR-ACTIVE-ELEG-DSD:Number of active patients on ART
esaude · Nov 13, 2019 · 59def50 · 59def50
2 parents e5dab86 + 39e4a55
commit 59def50
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diff --git a/.../main/java/org/openmrs/module/eptsreports/reporting/library/cohorts/DSDCohortQueries.java b/.../main/java/org/openmrs/module/eptsreports/reporting/library/cohorts/DSDCohortQueries.java
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+package org.openmrs.module.eptsreports.reporting.library.cohorts;
+
+import java.util.Date;
+import org.openmrs.Location;
+import org.openmrs.module.eptsreports.reporting.library.queries.DsdQueriesInterface;
+import org.openmrs.module.eptsreports.reporting.library.queries.TxCurrQueries;
+import org.openmrs.module.eptsreports.reporting.utils.EptsReportUtils;
+import org.openmrs.module.reporting.cohort.definition.CohortDefinition;
+import org.openmrs.module.reporting.cohort.definition.CompositionCohortDefinition;
+import org.openmrs.module.reporting.definition.library.DocumentedDefinition;
+import org.openmrs.module.reporting.evaluation.parameter.Parameter;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Component;
+
+@Component
+public class DSDCohortQueries {
+
+  @Autowired private GenericCohortQueries genericCohorts;
+
+  @DocumentedDefinition(value = "patientsActiveOnArtExcludingPregnantBreastfeedingAndTb")
+  public CohortDefinition getPatientsActiveOnArtExcludingPregnantBreastfeedingAndTb(
+      final String cohortName) {
+
+    final CompositionCohortDefinition dsd = new CompositionCohortDefinition();
+
+    dsd.setName(cohortName);
+    dsd.addParameter(new Parameter("startDate", "Start Date", Date.class));
+    dsd.addParameter(new Parameter("endDate", "End Date", Date.class));
+    dsd.addParameter(new Parameter("location", "location", Location.class));
+
+    String mappings = "startDate=${startDate},endDate=${endDate},location=${location}";
+
+    dsd.addSearch(
+        "IN-ART",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "IN-ART", TxCurrQueries.QUERY.findPatientsWhoAreCurrentlyEnrolledOnART),
+            mappings));
+
+    dsd.addSearch(
+        "PREGNANT-BRESTFEETING",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "PREGNANT-BRESTFEETING",
+                DsdQueriesInterface.QUERY
+                    .findPregnantWomenRegisteredInTheLast9MonthsOrBrestfeetingWomenRegisteredInTheLast18Months),
+            mappings));
+
+    dsd.addSearch(
+        "TB",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "TB", DsdQueriesInterface.QUERY.findPatientsBeingOnTuberculosisTreatmentEndPeriod),
+            mappings));
+
+    dsd.setCompositionString("IN-ART NOT (PREGNANT-BRESTFEETING OR TB)");
+
+    return dsd;
+  }
+
+  @DocumentedDefinition(value = "patientsActiveInArtEligibleForDsd")
+  public CohortDefinition getPatientsActiveOnArtEligibleForDsd(final String cohortName) {
+
+    final CompositionCohortDefinition dsd = new CompositionCohortDefinition();
+
+    dsd.setName(cohortName);
+    dsd.addParameter(new Parameter("startDate", "Start Date", Date.class));
+    dsd.addParameter(new Parameter("endDate", "End Date", Date.class));
+    dsd.addParameter(new Parameter("location", "location", Location.class));
+
+    String mappings = "startDate=${startDate},endDate=${endDate},location=${location}";
+
+    dsd.addSearch(
+        "IN-ART",
+        EptsReportUtils.map(
+            getPatientsActiveOnArtExcludingPregnantBreastfeedingAndTb(""), mappings));
+
+    dsd.addSearch(
+        "STABLE",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "findPatientsInArtWhoAreStable",
+                DsdQueriesInterface.QUERY.findPatientsInArtWhoAreStable),
+            mappings));
+
+    dsd.addSearch(
+        "SARCOMA-KAPOSI",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "SARCOMA-KAPOSI",
+                DsdQueriesInterface.QUERY.findPatientsWhoHaveBeenNotifiedOfKaposiSarcoma),
+            mappings));
+
+    dsd.addSearch(
+        "ADVERSASE-REACTIONS",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "ADVERSASE-REACTIONS",
+                DsdQueriesInterface.QUERY
+                    .findPatientsWithAdverseDrugReactionsRequiringRegularMonitoringNotifiedInLast6Months),
+            mappings));
+
+    dsd.setCompositionString("(IN-ART AND STABLE) NOT(ADVERSASE-REACTIONS OR SARCOMA-KAPOSI)");
+
+    return dsd;
+  }
+
+  @DocumentedDefinition(value = "patientsWhoNotElegibleDSD")
+  public CohortDefinition getPatientsActiveOnArtNotEligibleForDsd(final String cohortName) {
+
+    final CompositionCohortDefinition dsd = new CompositionCohortDefinition();
+
+    dsd.setName(cohortName);
+    dsd.addParameter(new Parameter("startDate", "Start Date", Date.class));
+    dsd.addParameter(new Parameter("endDate", "End Date", Date.class));
+    dsd.addParameter(new Parameter("location", "location", Location.class));
+
+    String mappings = "startDate=${startDate},endDate=${endDate},location=${location}";
+
+    dsd.addSearch(
+        "IN-ART",
+        EptsReportUtils.map(
+            getPatientsActiveOnArtExcludingPregnantBreastfeedingAndTb(""), mappings));
+
+    dsd.addSearch(
+        "STABLE",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "findPatientsInArtWhoAreStable",
+                DsdQueriesInterface.QUERY.findPatientsInArtWhoAreStable),
+            mappings));
+
+    dsd.addSearch(
+        "SARCOMA-KAPOSI",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "SARCOMA-KAPOSI",
+                DsdQueriesInterface.QUERY.findPatientsWhoHaveBeenNotifiedOfKaposiSarcoma),
+            mappings));
+
+    dsd.addSearch(
+        "ADVERSASE-REACTIONS",
+        EptsReportUtils.map(
+            this.genericCohorts.generalSql(
+                "ADVERSASE-REACTIONS",
+                DsdQueriesInterface.QUERY
+                    .findPatientsWithAdverseDrugReactionsRequiringRegularMonitoringNotifiedInLast6Months),
+            mappings));
+
+    dsd.setCompositionString(
+        "IN-ART NOT((STABLE AND IN-ART) NOT(ADVERSASE-REACTIONS OR SARCOMA-KAPOSI))");
+
+    return dsd;
+  }
+}