Fix for Zygote FluxML/Zygote.jl#717 included.

femtomc · Aug 25, 2020 · 086585d · 086585d
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diff --git a/docs/franklin/Project.toml b/docs/franklin/Project.toml
@@ -4,7 +4,9 @@ AdvancedHMC = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d"
 Franklin = "713c75ef-9fc9-4b05-94a9-213340da978e"
 GR = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
 Jaynes = "a2015381-cef8-4fe1-827c-95a77dd17ccf"
+Literate = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
 MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
 NodeJS = "2bd173c7-0d6d-553b-b6af-13a54713934c"
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 Pluto = "c3e4b0f8-55cb-11ea-2926-15256bba5781"
 StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
diff --git a/docs/franklin/_assets/scripts/bayeslinreg.jl b/docs/franklin/_assets/scripts/bayeslinreg.jl
diff --git a/docs/franklin/_assets/scripts/bayeslinreg_1.jl b/docs/franklin/_assets/scripts/bayeslinreg_1.jl
diff --git a/docs/franklin/_assets/scripts/bayeslinreg_2.jl b/docs/franklin/_assets/scripts/bayeslinreg_2.jl
diff --git a/docs/franklin/_assets/scripts/bayeslinreg_3.jl b/docs/franklin/_assets/scripts/bayeslinreg_3.jl
diff --git a/docs/franklin/_assets/scripts/generate_results.jl b/docs/franklin/_assets/scripts/generate_results.jl
diff --git a/docs/franklin/_assets/scripts/gmm.jl b/docs/franklin/_assets/scripts/gmm.jl
diff --git a/docs/franklin/_assets/scripts/output/bayeslinreg_1.txt b/docs/franklin/_assets/scripts/output/bayeslinreg_1.txt
diff --git a/docs/franklin/_assets/scripts/output/bayeslinreg_2.txt b/docs/franklin/_assets/scripts/output/bayeslinreg_2.txt
diff --git a/docs/franklin/_assets/scripts/output/bayeslinreg_3.txt b/docs/franklin/_assets/scripts/output/bayeslinreg_3.txt
diff --git a/docs/franklin/_assets/scripts/script1.jl b/docs/franklin/_assets/scripts/script1.jl
diff --git a/docs/franklin/_assets/scripts/script2.jl b/docs/franklin/_assets/scripts/script2.jl
diff --git a/docs/franklin/notebooks.md b/docs/franklin/notebooks.md
@@ -2,10 +2,10 @@
 
 Here are a number of notebooks which explore common models, modeling idioms, and usage of the inference library.
 
-* [Bayesian linear regression (with HMC and AdvancedHMC inference)](../notebooks/bayeslinreg)
+* [Bayesian linear regression (with HMC and AdvancedHMC inference)](../bayeslinreg)
 
-* [Gaussian mixture models (with custom kernels and automatic differentiation variational inference)](../notebooks/gmm)
+* [Gaussian mixture models (with custom kernels and automatic differentiation variational inference)](../gmm)
 
-* [Bayesian Lotka-Volterra (with AdvancedHMC inference)](../notebooks/blotka)
+* [Bayesian Lotka-Volterra (with AdvancedHMC inference)](../blotka)
 
-* [Hidden Markov model with multi-variate transition and observation (with programmable particle filtering)](../notebooks/hmm)
+* [Hidden Markov model with multi-variate transition and observation (with programmable particle filtering)](../hmm)
diff --git a/docs/franklin/notebooks/bayeslinreg.md b/docs/franklin/notebooks/bayeslinreg.md
diff --git a/docs/franklin/notebooks/gmm.md b/docs/franklin/notebooks/gmm.md
diff --git a/src/language_extensions/mcmc_chains.jl b/src/language_extensions/mcmc_chains.jl
@@ -4,7 +4,6 @@ macro load_chains()
         @info "Loading diagnostic interface to \u001b[3m\u001b[34;1mMCMCChains.jl\u001b[0m\n\n      \u001b[34;1mhttps://github.com/TuringLang/MCMCChains.jl\n\n "
         try
             using MCMCChains
-            using GR
             using StatsPlots
             using Random
         catch