Merge branch 'devel' of git.bioconductor.org:packages/rawrr into devel

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: rawrr
 Type: Package
 Title: Direct Access to Orbitrap Data and Beyond
-Version: 1.13.0
+Version: 1.13.1
 Authors@R: c(person("Christian", "Panse",
         email = "[email protected]",
         role = c("aut", "cre"),

R/rawrr.R

@@ -87,6 +87,7 @@
   function(rawfile, input, rawrrArgs="scans", tmpdir=tempdir(),
            removeTempfile=TRUE){
 
+
     mono <- if(Sys.info()['sysname'] %in% c("Darwin", "Linux")) TRUE else FALSE
     exe <- .rawrrAssembly()
 
@@ -101,6 +102,10 @@
     }
 
     if (mono){
+      if (system2(command = "/usr/bin/which", args = c("mono"),
+            stderr = FALSE, stdout = FALSE) != 0){
+        stop("mono is not available; please check https://www.mono-project.com/")
+      }
       rvs <- system2(Sys.which("mono"), args = c(shQuote(exe),
                                                  shQuote(rawfile),
                                                  rawrrArgs, shQuote(tfi),

vignettes/rawrr.bib

@@ -147,14 +147,8 @@ @article{Gehrig2020
   journal = {Journal of the American Society for Mass Spectrometry}
 }
 
-
-
-
-
-
 @book{newS,
-  author = {Richard A. Becker and John M. Chambers and Allan
-                  R. Wilks},
+  author = {Richard A. Becker and John M. Chambers and Allan R. Wilks},
   title = {The New {S} Language},
   publisher = {Chapman \& Hall},
   year = 1988,