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Mitchell R. Vollger committed Nov 27, 2024
1 parent 05e45e7 commit 1c2e964
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion workflow/rules/apply-model.smk
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ rule fire:
bam=ancient(get_input_bam),
output:
bam=temp("temp/{sm}/fire/{chrom}.fire.bam"),
threads: 8
threads: 6
resources:
mem_mb=8 * 1024,
params:
Expand Down Expand Up @@ -44,6 +44,7 @@ rule merged_fire_bam:
DEFAULT_ENV
benchmark:
"results/{sm}/additional-outputs-{v}/benchmarks/{sm}-merged-fire-bam.txt"
priority: 100
shell:
"""
samtools merge -@ {threads} -u {input.bams} -o - \
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