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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 646 369

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 313 81

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 311 81

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 146 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 185 repositories
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 646 GPL-2.0 369 77 (1 issue needs help) 9 Updated Jan 18, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 6 MIT 0 17 1 Updated Jan 18, 2025
  • adapol Public

    Adaptive Pole Fitting for Quantum Many-Body Physics

    flatironinstitute/adapol’s past year of commit activity
    Jupyter Notebook 11 GPL-3.0 1 1 0 Updated Jan 17, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 16, 2025
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Jan 16, 2025
  • jenkins-webserver-template Public

    Template repo to serve as recipient of jenkins documentation build pushes

    flatironinstitute/jenkins-webserver-template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 16, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 85 MIT 8 101 2 Updated Jan 15, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 40 Apache-2.0 1 18 3 Updated Jan 14, 2025
  • wasmlets Public
    flatironinstitute/wasmlets’s past year of commit activity
    TypeScript 1 BSD-3-Clause 0 1 0 Updated Jan 14, 2025
  • web-wavelets-benchmarking Public

    Wasmlets vs Pyodide vs discrete-wavelets benchmark

    flatironinstitute/web-wavelets-benchmarking’s past year of commit activity
    TypeScript 0 1 0 0 Updated Jan 14, 2025
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