Reset nmod_poly_factor_t before writing to it #1495

Workflow file for this run

	name: CI

	on:
	pull_request:
	push:
	branches:
	- trunk
	- flint-*

	concurrency:
	# group by workflow and ref; the last slightly strange component ensures that for pull
	# requests, we limit to 1 concurrent job, but for the trunk branch we don't
	group: ${{ github.workflow }}-${{ github.ref }}-${{ github.ref != 'refs/heads/trunk' \|\| github.run_number }}
	# Cancel intermediate builds, but only if it is a pull request build.
	cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}

	jobs:
	##############################################################################
	# ubuntu, gcc, avx2, code coverage
	##############################################################################
	ubuntu-avx2-codecoverage:
	name: Ubuntu GCC, AVX2, Code Coverage (x10)

	runs-on: ubuntu-latest

	env:
	CC: "gcc"
	FLINT_TEST_MULTIPLIER: "10"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup"
	run: \|
	sudo apt-get install -y libgmp-dev
	sudo apt-get install -y libmpfr-dev
	sudo apt-get install -y autoconf
	sudo apt-get install -y libtool-bin
	gcc --version
	gcov --version
	make --version
	autoconf --version
	libtool --version
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--enable-avx2 \
	--disable-static \
	--enable-coverage

	- name: "Compile library"
	run: \|
	$MAKE
	ldd libflint.so

	- name: "Compile tests"
	run: \|
	$MAKE tests

	- name: "Check"
	run: \|
	$MAKE check

	- name: "Gather coverage data"
	run: dev/gather_coverage.sh

	- name: "Upload coverage data"
	uses: codecov/[email protected]



	##############################################################################
	# ubuntu, gcc, assert
	##############################################################################
	ubuntu-gcc-assert:
	name: Ubuntu GCC with NTL (assert, x2)

	runs-on: ubuntu-latest

	env:
	CC: "gcc"
	FLINT_TEST_MULTIPLIER: "2"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup"
	run: \|
	sudo apt-get install -y libgmp-dev libmpfr-dev libntl-dev autoconf libtool-bin
	gcc --version
	make --version
	autoconf --version
	libtool --version
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--with-gmp=/usr \
	--with-mpfr=/usr \
	--with-ntl=/usr \
	--enable-assert \
	--disable-static \
	--disable-debug

	- name: "Compile library"
	run: \|
	$MAKE
	ldd libflint.so

	- name: "Compile tests"
	run: \|
	$MAKE tests

	- name: "Check"
	run: \|
	$MAKE check



	##############################################################################
	# macos with gcc and blas
	##############################################################################
	macos-gcc:
	name: macOS GCC with BLAS (x3)

	runs-on: macos-latest

	env:
	CC: "gcc"
	FLINT_TEST_MULTIPLIER: "3"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup"
	run: \|
	brew install gcc
	brew install make
	brew install gmp
	brew install mpfr
	brew install autoconf
	brew install libtool
	brew install automake
	brew install openblas
	gcc --version
	gmake --version
	autoconf --version
	echo "MAKE=gmake -j$(expr $(nproc) + 1) -l 10 --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--with-gmp=$(brew --prefix) \
	--with-mpfr=$(brew --prefix) \
	--with-blas=$(brew --prefix)/opt/openblas \
	--disable-static \
	--disable-debug

	- name: "Compile library"
	run: \|
	$MAKE

	- name: "Compile tests"
	run: \|
	$MAKE tests

	- name: "Check"
	run: \|
	$MAKE check



	##############################################################################
	# freebsd with clang
	##############################################################################
	freebsd-gcc:
	name: FreeBSD Clang (x0.5)

	runs-on: macos-latest
	env:
	FLINT_TEST_MULTIPLIER: "0.5"

	steps:
	- uses: actions/checkout@v4

	- name: "Run tests on FreeBSD"
	uses: cross-platform-actions/[email protected]
	timeout-minutes: 30
	continue-on-error: true
	with:
	operating_system: freebsd
	version: '13.2'
	shell: bash
	run: \|
	sudo pkg install -y pkgconf gmake gmp mpfr autoconf libtool automake
	gmake --version
	clang --version
	autoconf --version
	libtool --version
	touch _is_setup

	./bootstrap.sh
	touch _is_bootstrapped

	./configure \
	CC=clang \
	--with-gmp-include=$(pkgconf --variable=includedir gmp) \
	--with-gmp-lib=$(pkgconf --variable=libdir gmp) \
	--with-mpfr-include=$(pkgconf --variable=includedir mpfr) \
	--with-mpfr-lib=$(pkgconf --variable=libdir mpfr) \
	--disable-static \
	--disable-debug
	touch _is_configured

	gmake -j$(expr $(sysctl -n hw.ncpu) + 1)
	touch _is_library_built

	gmake -j$(expr $(sysctl -n hw.ncpu) + 1) tests
	touch _is_tests_built

	gmake -j$(expr $(sysctl -n hw.ncpu) + 1) check
	touch _is_checked

	# Sometimes the FreeBSD runner cannot exit properly. We created files
	# for each step to show that it was able to run the tests.
	- if: always()
	name: "Check that everything was okay"
	run: \|
	if test ! -f _is_setup;
	then
	echo "Setup failed!"
	exit 1
	elif test ! -f _is_bootstrapped;
	then
	echo "Bootstrap failed!"
	exit 2
	elif test ! -f _is_configured;
	then
	echo "Configuration failed!"
	exit 3
	elif test ! -f _is_library_built;
	then
	echo "Building library failed!"
	exit 4
	elif test ! -f _is_tests_built;
	then
	echo "Building tests failed!"
	exit 5
	elif test ! -f _is_checked;
	then
	echo "Check failed!"
	exit 6
	fi
	echo "All good!"



	##############################################################################
	# cygwin with gcc
	##############################################################################
	cygwin-gcc:
	name: Cygwin GCC (x0.5)

	runs-on: windows-latest

	defaults:
	run:
	shell: C:\cygwin64\bin\bash.exe --login -o igncr '{0}'

	env:
	REPO: /cygdrive/d/a/flint/flint # FIXME: De-hardcode this
	CC: "gcc"
	FLINT_TEST_MULTIPLIER: "0.5"

	steps:
	- uses: actions/checkout@v4

	- name: "Set up Cygwin"
	uses: gap-actions/setup-cygwin@v1
	with:
	PKGS_TO_INSTALL: "dos2unix,gcc-core,make,libgmp-devel,libmpfr-devel,libtool,autoconf,automake"

	- name: "Setup"
	run: \|
	gcc --version
	make --version
	autoconf --version
	libtool --version
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	cd ${REPO}
	dos2unix configure
	dos2unix bootstrap.sh
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--disable-static \
	--disable-debug

	- name: "Compile library"
	run: \|
	cd ${REPO}
	${MAKE}

	- name: "Compile tests"
	run: \|
	cd ${REPO}
	$MAKE tests

	- name: "Check"
	run: \|
	cd ${REPO}
	$MAKE check



	#############################################################################
	# ubuntu with clang
	#############################################################################
	ubuntu-clang:
	name: Ubuntu Clang (x5)

	runs-on: ubuntu-latest

	env:
	LOCAL: ${{ github.workspace }}/local
	LDFLAGS: "-Wl,-rpath,$LOCAL/lib"
	CC: "clang"
	FLINT_TEST_MULTIPLIER: "5"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup"
	run: \|
	sudo apt-get install -y libgmp-dev
	sudo apt-get install -y libmpfr-dev
	sudo apt-get install -y autoconf
	sudo apt-get install -y libtool-bin
	clang --version
	make --version
	autoconf --version
	libtool --version
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--disable-static \
	--disable-debug

	- name: "Compile library"
	run: \|
	$MAKE
	ldd libflint.so

	- name: "Compile tests"
	run: \|
	$MAKE tests

	- name: "Check"
	run: \|
	$MAKE check



	#############################################################################
	# ubuntu with gcc and cmake (no checks)
	#############################################################################
	ubuntu-cmake-gcc:
	name: Ubuntu GCC, CMake (no checks)

	runs-on: ubuntu-latest

	env:
	LOCAL: ${{ github.workspace }}/local
	LDFLAGS: "-Wl,-rpath,$LOCAL/lib"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup"
	run: \|
	sudo apt-get install -y cmake
	sudo apt-get install -y libgmp-dev
	sudo apt-get install -y libmpfr-dev
	gcc --version
	make --version
	cmake --version
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	mkdir build
	cd build
	cmake -G"Unix Makefiles" -DWITH_NTL=no -DBUILD_TESTING=yes \
	-DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=${LOCAL} ..

	- name: "Compile library"
	run: \|
	cd build
	$MAKE
	ldd lib/libflint.so



	#############################################################################
	# mingw with gcc
	#############################################################################
	mingw64-gcc:
	name: MinGW GCC (x0.5)

	runs-on: windows-latest

	defaults:
	run:
	shell: msys2 {0}

	env:
	CC: "gcc"
	FLINT_TEST_MULTIPLIER: "0.5"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup MinGW"
	uses: msys2/setup-msys2@v2
	with:
	msystem: mingw64
	update: true
	install: mingw-w64-x86_64-gcc mingw-w64-x86_64-autotools

	- name: "Setup"
	run: \|
	gcc --version
	make --version
	autoconf --version
	libtool --version
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--disable-static \
	--disable-debug

	- name: "Compile library"
	run: \|
	${MAKE}

	- name: "Compile tests"
	run: \|
	${MAKE} tests

	- name: "Check"
	run: \|
	${MAKE} check



	##############################################################################
	# msvc
	##############################################################################
	msvc:
	name: MSVC (x1)

	runs-on: windows-latest

	steps:
	- uses: actions/checkout@v4

	- name: "Setup cache for dependencies"
	uses: actions/github-script@v6
	with:
	script: \|
	core.exportVariable('ACTIONS_CACHE_URL', process.env.ACTIONS_CACHE_URL \|\| '');
	core.exportVariable('ACTIONS_RUNTIME_TOKEN', process.env.ACTIONS_RUNTIME_TOKEN \|\| '');

	- name: "Install dependencies"
	run: \|
	vcpkg install gmp mpfr pthreads --binarysource="clear;x-gha,readwrite"

	- name: "Setup MSVC"
	uses: ilammy/[email protected]
	with:
	arch: x86_64
	toolset: 14.37.32822
	vsversion: 17.6.0

	- name: "Configure"
	run: \|
	mkdir build
	cd build
	# For single build, we need atomics
	cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE=C:/vcpkg/scripts/buildsystems/vcpkg.cmake -DCMAKE_C_FLAGS="/wd4018 /wd4146 /wd4244 /wd4267 /wd4305 /wd4996 /std:c11 /experimental:c11atomics" -DBUILD_TESTING=ON -DCMAKE_BUILD_TYPE=Release ..

	- name: "Build"
	run: \|
	cd build
	cmake --build . -- -j3

	- name: "Check"
	run: \|
	cd build
	set "FLINT_TEST_MULTIPLIER=1"
	ctest -j3 --output-on-failure --timeout 450



	##############################################################################
	# alpine linux, musl, 32-bit (assert)
	##############################################################################
	alpine-32bit:
	name: Alpine Linux, musl, 32-bit (assert, x1.5)

	runs-on: ubuntu-latest

	env:
	CC: "gcc"
	FLINT_TEST_MULTIPLIER: "1.5"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup latest Alpine Linux"
	uses: jirutka/setup-alpine@v1
	with:
	arch: x86
	branch: edge
	packages: >
	gmp-dev
	mpfr-dev
	gcc
	musl-dev
	make
	autoconf
	automake
	libtool

	- name: "Setup"
	run: \|
	gcc --version
	make --version
	autoconf --version
	libtool --version
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV
	shell: alpine.sh {0}

	- name: "Configure"
	run: \|
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--enable-assert \
	--disable-static \
	--disable-debug
	shell: alpine.sh {0}

	- name: "Compile library"
	run: \|
	$MAKE
	shell: alpine.sh {0}

	- name: "Compile tests"
	run: \|
	$MAKE tests
	shell: alpine.sh {0}

	- name: "Check"
	run: \|
	$MAKE check
	shell: alpine.sh {0}



	##############################################################################
	# nemo
	##############################################################################
	nemo:
	name: Nemo.jl (temporary branch)

	runs-on: ubuntu-latest

	env:
	LOCAL: ${{ github.workspace }}/local
	CC: "gcc"

	steps:
	- uses: actions/checkout@v4

	- name: "Setup"
	run: \|
	sudo apt-get install -y sed
	sudo apt-get install -y autoconf
	sudo apt-get install -y libtool-bin
	gcc --version
	make --version
	autoconf --version
	libtool --version
	julia --version
	julia -e 'println(Base.BinaryPlatforms.HostPlatform())'
	echo "MAKE=make -j$(expr $(nproc) + 1) --output-sync=target" >> $GITHUB_ENV

	- name: "Configure"
	run: \|
	# Find path to GMP and MPFR
	gmp_path=$(julia -e 'include("dev/find_gmp_mpfr.jl"); print(gmp_artifact_dir())')
	echo "Path to GMP: ${gmp_path}"
	mpfr_path=$(julia -e 'include("dev/find_gmp_mpfr.jl"); print(mpfr_artifact_dir())')
	echo "Path to MPFR: ${mpfr_path}"

	# Make sure that we output an soname which corresponds to FLINT_JLL's
	# soname
	wget https://raw.githubusercontent.com/JuliaPackaging/Yggdrasil/master/F/FLINT/build_tarballs.jl
	FLINT_JLL_VERSION=$(grep "upstream_version =" build_tarballs.jl \| sed "s/upstream_version = v\"$[0-9\.]*$\"/\1/")
	FLINT_JLL_SONAME=$(grep "$FLINT_JLL_VERSION => " configure.ac \| sed "s/# $FLINT_JLL_VERSION => $[0-9\.]\+$/\1/")
	FLINT_JLL_MAJOR=$(echo $FLINT_JLL_SONAME \| sed "s/$[0-9]\+$\.[0-9]\+\.[0-9]\+/\1/")
	FLINT_JLL_MINOR=$(echo $FLINT_JLL_SONAME \| sed "s/[0-9]\+\.$[0-9]\+$\.[0-9]\+/\1/")
	FLINT_JLL_PATCH=$(echo $FLINT_JLL_SONAME \| sed "s/[0-9]\+\.[0-9]\+\.$[0-9]\+$/\1/")
	sed -i "s/^$FLINT_MAJOR_SO=$[0-9]\+/\1$FLINT_JLL_MAJOR/" configure.ac
	sed -i "s/^$FLINT_MINOR_SO=$[0-9]\+/\1$FLINT_JLL_MINOR/" configure.ac
	sed -i "s/^$FLINT_PATCH_SO=$[0-9]\+/\1$FLINT_JLL_PATCH/" configure.ac

	# Now we can configure FLINT. However, recent versions of MPFR_jll has
	# memory sanitation which messes with finding mpfr_init in the
	# configure-script. Hence, we also omit the check for finding MPFR.
	# FIXME: Probably want to fix this.
	./bootstrap.sh
	./configure \
	CC=${CC} \
	--prefix=${LOCAL} \
	--with-gmp=${gmp_path} \
	--with-mpfr=${mpfr_path} \
	--disable-mpfr-check \
	--disable-static \
	--disable-debug

	- name: "Compile and install"
	run: \|
	$MAKE
	$MAKE install

	- name: "Set up Nemo.jl"
	run: \|
	# Override FLINT_jll's libflint with ours

	# NOTE: Reverse me when Nemo uses FLINT v3.
	# git clone https://github.com/Nemocas/Nemo.jl.git
	git clone https://github.com/albinahlback/Nemo.jl.git && cd Nemo.jl && git checkout flint3 && cd ..

	julia -e "import Pkg; Pkg.develop(path=\"./Nemo.jl\");"
	echo -e "[e134572f-a0d5-539d-bddf-3cad8db41a82]\nFLINT = \"${LOCAL}\"" > ~/.julia/artifacts/Overrides.toml
	touch Nemo.jl/src/Nemo.jl
	julia -e "using Nemo; println(\"Path to Nemo's libflint:\", Nemo.libflint)"

	- name: "Check Nemo.jl"
	run: \|
	julia -e "import Pkg; Pkg.test(\"Nemo\")"

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Reset nmod_poly_factor_t before writing to it #1495

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Reset nmod_poly_factor_t before writing to it #1495

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Workflow file for this run