Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[auto] Update dependencies in poetry.lock #868

Closed
wants to merge 1 commit into from
Closed

Conversation

tcompa
Copy link
Collaborator

@tcompa tcompa commented Nov 19, 2024

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 2 updates, 0 removals

  - Updating packaging (24.1 -> 24.2)
  - Updating zipp (3.20.2 -> 3.21.0)

Writing lock file

Outdated dependencies before PR:

alabaster                                      (!) 0.7.16             
anndata                                            0.10.9             
astropy                                        (!) 6.0.1              
astropy-iers-data                              (!) 0.2024.11.4.0.33.34
cellpose                                       (!) 2.2.3              
contourpy                                      (!) 1.3.0              
dask                                               2024.8.0           
debugpy                                        (!) 1.8.7              
docstring-parser                                   0.15               
executing                                      (!) 0.10.0             
filelock                                           3.13.4             
flexparser                                     (!) 0.3.1              
fonttools                                      (!) 4.54.1             
httpcore                                       (!) 1.0.6              
imageio-ffmpeg                                 (!) 0.4.9              
ipython                                        (!) 8.18.1             
jedi                                           (!) 0.19.1             
json5                                          (!) 0.9.25             
jupyterlab                                     (!) 4.2.5              
lxml                                               4.9.4              
napari-console                                 (!) 0.1.0              
napari-segment-blobs-and-things-with-membranes (!) 0.3.8              
napari-skimage-regionprops                     (!) 0.8.2              
networkx                                       (!) 3.2.1              
numcodecs                                          0.12.1             
numpy                                              1.26.4             
nvidia-cublas-cu12                             (!) 12.4.5.8           
nvidia-cuda-cupti-cu12                         (!) 12.4.127           
nvidia-cuda-nvrtc-cu12                         (!) 12.4.127           
nvidia-cuda-runtime-cu12                       (!) 12.4.127           
nvidia-cudnn-cu12                              (!) 9.1.0.70           
nvidia-cufft-cu12                              (!) 11.2.1.3           
nvidia-curand-cu12                             (!) 10.3.5.147         
nvidia-cusolver-cu12                           (!) 11.6.1.9           
nvidia-cusparse-cu12                           (!) 12.3.1.170         
nvidia-nccl-cu12                               (!) 2.21.5             
nvidia-nvjitlink-cu12                          (!) 12.4.127           
nvidia-nvtx-cu12                               (!) 12.4.127           
packaging                                          24.1               
pint                                           (!) 0.24.3             
pooch                                          (!) 1.8.0              
pydantic                                           2.8.2              
pydantic-core                                      2.20.1             
pyerfa                                         (!) 2.0.1.4            
pytest                                         (!) 7.4.4              
rpds-py                                        (!) 0.20.1             
scipy                                              1.13.1             
setuptools                                         75.3.0             
sphinx                                         (!) 7.4.7              
stack-data                                     (!) 0.5.1              
stackview                                      (!) 0.8.2              
sympy                                          (!) 1.13.1             
tifffile                                       (!) 2024.8.30          
tomli                                          (!) 2.0.2              
tqdm                                           (!) 4.66.6             
typer                                          (!) 0.12.5             
webcolors                                      (!) 24.8.0             
zarr                                               2.18.2             
zipp                                               3.20.2             

Outdated dependencies after PR:

alabaster                                      (!) 0.7.16     1.0.0    
anndata                                            0.10.9     0.11.1   
astropy                                        (!) 6.0.1      6.1.6    
cellpose                                       (!) 2.2.3      3.1.0    
contourpy                                      (!) 1.3.0      1.3.1    
dask                                               2024.8.0   2024.11.2
docstring-parser                                   0.15       0.16     
executing                                      (!) 0.10.0     2.1.0    
filelock                                           3.13.4     3.16.1   
imageio-ffmpeg                                 (!) 0.4.9      0.5.1    
ipython                                        (!) 8.18.1     8.29.0   
lxml                                               4.9.4      5.3.0    
napari-segment-blobs-and-things-with-membranes (!) 0.3.8      0.3.12   
napari-skimage-regionprops                     (!) 0.8.2      0.10.1   
networkx                                       (!) 3.2.1      3.4.2    
notebook                                       (!) 7.0.7      7.2.2    
numcodecs                                          0.12.1     0.14.0   
numpy                                              1.26.4     2.1.3    
nvidia-cublas-cu12                             (!) 12.4.5.8   12.6.3.3 
nvidia-cuda-cupti-cu12                         (!) 12.4.127   12.6.80  
nvidia-cuda-nvrtc-cu12                         (!) 12.4.127   12.6.77  
nvidia-cuda-runtime-cu12                       (!) 12.4.127   12.6.77  
nvidia-cudnn-cu12                              (!) 9.1.0.70   9.5.1.17 
nvidia-cufft-cu12                              (!) 11.2.1.3   11.3.0.4 
nvidia-curand-cu12                             (!) 10.3.5.147 10.3.7.77
nvidia-cusolver-cu12                           (!) 11.6.1.9   11.7.1.2 
nvidia-cusparse-cu12                           (!) 12.3.1.170 12.5.4.2 
nvidia-nccl-cu12                               (!) 2.21.5     2.23.4   
nvidia-nvjitlink-cu12                          (!) 12.4.127   12.6.77  
nvidia-nvtx-cu12                               (!) 12.4.127   12.6.77  
pooch                                          (!) 1.8.0      1.8.2    
pydantic                                           2.8.2      2.9.2    
pydantic-core                                      2.20.1     2.27.0   
pytest                                         (!) 7.4.4      8.3.3    
scipy                                              1.13.1     1.14.1   
sphinx                                         (!) 7.4.7      8.1.3    
stack-data                                     (!) 0.5.1      0.6.3    
stackview                                      (!) 0.8.2      0.12.0   
sympy                                          (!) 1.13.1     1.13.3   
tifffile                                       (!) 2024.8.30  2024.9.20
zarr                                               2.18.2     2.18.3   

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

Copy link

Coverage report

This PR does not seem to contain any modification to coverable code.

@tcompa
Copy link
Collaborator Author

tcompa commented Nov 19, 2024

Closing, to simplify merging of #866

@tcompa tcompa closed this Nov 19, 2024
@tcompa tcompa deleted the poetry-update branch November 19, 2024 09:37
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant