fixing typos #29
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| # Workflow is triggered on label and check installation on various operating systems | |
| # This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning | |
| name: Macos Install | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| env: | |
| BUILD_LOC: "./build" | |
| BRANCH: ${{ github.head_ref || github.ref_name }} | |
| permissions: | |
| packages: read | |
| contents: write | |
| pull-requests: write | |
| repository-projects: write | |
| jobs: | |
| setup-and-install: | |
| name: macos-latest R release | |
| runs-on: macos-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - name: prepare macos | |
| run: | | |
| brew install R | |
| brew install pkg-config | |
| brew install automake # needed to run autoconf | |
| - name: install GSL | |
| run: | | |
| brew install gsl | |
| - name: install JAGS | |
| run: | | |
| brew install jags | |
| # - name: install rjags | |
| # run: | | |
| # install.packages("rjags", type="source", repos=c(CRAN="https://cran.r-project.org")) | |
| # library("rjags") | |
| # shell: Rscript {0} | |
| - name: install INLA dependencies | |
| run: | | |
| brew install udunits | |
| brew install [email protected] # s2 package | |
| brew install gdal # installs geos as dependency | |
| # for s2 fmesher terra) | |
| brew install proj # sf package | |
| - name: install INLA | |
| run: | | |
| install.packages("INLA", repos = c(CRAN = "https://cran.r-project.org", INLA = "https://inla.r-inla-download.org/R/stable"), dep = TRUE) | |
| shell: Rscript {0} | |
| - name: install pak | |
| run: | | |
| install.packages('pak', repos=c(CRAN="https://cran.r-project.org")) | |
| shell: Rscript {0} | |
| # - name: install from CRAN with pak | |
| # run: | | |
| # pak::pkg_install('abn', dependencies=TRUE) | |
| # library('abn') | |
| # shell: Rscript {0} | |
| - name: temporal workaround for ragg | |
| run: | | |
| pak::pak("r-lib/ragg") | |
| shell: Rscript {0} | |
| - name: pak install from GitHub | |
| run: | | |
| pak::repo_add(INLA = "https://inla.r-inla-download.org/R/stable/") | |
| pak::pkg_install("furrer-lab/abn@${{ env.BRANCH }}", dependencies=TRUE) | |
| library('abn') | |
| shell: Rscript {0} | |
| - name: fetch the repository from GitHub | |
| uses: actions/checkout@v4 | |
| - name: deactivate the renv | |
| run: | | |
| renv::deactivate() | |
| shell: Rscript {0} | |
| - name: install from source | |
| run: | | |
| pak::local_install(dependencies=TRUE) | |
| shell: Rscript {0} |