fixing typos #12
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| # Workflow is triggered on label and check installation on various operating systems | |
| # This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning | |
| name: Windows Install | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| env: | |
| BUILD_LOC: "./build" | |
| BRANCH: ${{ github.head_ref || github.ref_name }} | |
| JAGS_MAJORV: '4' | |
| JAGS_VERSION: '4.3.1' | |
| JAGS_URL: "https://sourceforge.net/projects/mcmc-jags/files/JAGS" | |
| permissions: | |
| packages: read | |
| contents: write | |
| pull-requests: write | |
| repository-projects: write | |
| jobs: | |
| setup-and-install: | |
| name: windows-latest R release | |
| runs-on: windows-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - name: install pak | |
| run: | | |
| install.packages('pak', repos=c(CRAN="https://cran.r-project.org")) | |
| shell: Rscript {0} | |
| - name: install GSL | |
| run: | | |
| Import-Module bitstransfer | |
| New-Item -ItemType Directory -Force -Path "C:\Program Files\cygwin" | |
| start-bitstransfer -source https://cygwin.com/setup-x86_64.exe "C:\Program Files\cygwin\setup-x86_64.exe" | |
| Start-Process -Wait -FilePath "C:\Program Files\cygwin\setup-x86_64.exe" -ArgumentList "--quiet-mode --packages=gsl --site=https://cygwin.mirror.constant.com" -PassThru | |
| - name: install JAGS | |
| run: | | |
| Import-Module bitstransfer | |
| New-Item -ItemType Directory -Force -Path "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}" | |
| start-bitstransfer -source ${{ env.JAGS_URL }}/${{ env.JAGS_MAJORV }}.x/Windows/JAGS-${{ env.JAGS_VERSION }}.exe/download "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}\JAGS-${{ env.JAGS_VERSION }}.exe" | |
| Start-Process -Wait -FilePath "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}\JAGS-${{ env.JAGS_VERSION }}.exe" -ArgumentList "/S" -PassThru | |
| - name: install rjags separately | |
| run: | | |
| Sys.setenv(JAGS_HOME="C:/Program Files/JAGS/JAGS-${{ env.JAGS_VERSION }}") | |
| install.packages("rjags", repos=c(CRAN="https://cran.r-project.org")) | |
| library("rjags") | |
| shell: Rscript {0} | |
| # - name: install from CRAN with pak | |
| # run: | | |
| # pak::pkg_install('abn', dependencies=TRUE) | |
| # library('abn') | |
| # shell: Rscript {0} | |
| - name: temporal workaround for ragg | |
| run: | | |
| pak::pak("r-lib/ragg") | |
| shell: Rscript {0} | |
| - name: pak install from GitHub | |
| run: | | |
| pak::repo_add(INLA = "https://inla.r-inla-download.org/R/stable/") | |
| pak::pkg_install("furrer-lab/abn@${{ env.BRANCH }}", dependencies=TRUE) | |
| library('abn') | |
| shell: Rscript {0} | |
| - name: fetch the repository from GitHub | |
| uses: actions/checkout@v4 | |
| - name: deactivate the renv | |
| run: | | |
| renv::deactivate() | |
| shell: Rscript {0} | |
| - name: install from source | |
| run: | | |
| pak::local_install(dependencies=TRUE) | |
| shell: Rscript {0} | |
| - name: run the tests | |
| run: | | |
| pak::pak('r-lib/testthat') | |
| library("abn") | |
| testthat::test_local(path='tests', load_package='none') | |
| shell: Rscript {0} |