updated citation with JOSS publication

furrer-lab · Oct 1, 2024 · 3678933 · 3678933
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -24,6 +24,7 @@ Makefile
 ^doc$
 ^revdep$
 ^LICENSE\.md$
+^CITATION.cff$
 ^data-raw$
 ^CODE_OF_CONDUCT\.md$
 ^\.github$

diff --git a/CITATION.cff b/CITATION.cff
@@ -0,0 +1,48 @@
+cff-version: "1.2.0"
+authors:
+- family-names: Delucchi
+  given-names: Matteo
+  orcid: "https://orcid.org/0000-0002-9327-1496"
+- family-names: Liechti
+  given-names: Jonas I.
+  orcid: "https://orcid.org/0000-0003-3447-3060"
+- family-names: Spinner
+  given-names: Georg R.
+  orcid: "https://orcid.org/0000-0001-9640-8155"
+- family-names: Furrer
+  given-names: Reinhard
+  orcid: "https://orcid.org/0000-0002-6319-2332"
+contact:
+- family-names: Furrer
+  given-names: Reinhard
+  orcid: "https://orcid.org/0000-0002-6319-2332"
+doi: 10.5281/zenodo.13788885
+message: If you use this software, please cite our article in the
+  Journal of Open Source Software.
+preferred-citation:
+  authors:
+  - family-names: Delucchi
+    given-names: Matteo
+    orcid: "https://orcid.org/0000-0002-9327-1496"
+  - family-names: Liechti
+    given-names: Jonas I.
+    orcid: "https://orcid.org/0000-0003-3447-3060"
+  - family-names: Spinner
+    given-names: Georg R.
+    orcid: "https://orcid.org/0000-0001-9640-8155"
+  - family-names: Furrer
+    given-names: Reinhard
+    orcid: "https://orcid.org/0000-0002-6319-2332"
+  date-published: 2024-09-30
+  doi: 10.21105/joss.06822
+  issn: 2475-9066
+  issue: 101
+  journal: Journal of Open Source Software
+  publisher:
+    name: Open Journals
+  start: 6822
+  title: Additive Bayesian Networks
+  type: article
+  url: "https://joss.theoj.org/papers/10.21105/joss.06822"
+  volume: 9
+title: Additive Bayesian Networks
diff --git a/README.md b/README.md
@@ -690,20 +690,22 @@ If you use `abn` in your research, please cite it as follows:
 
 ``` r
 > citation("abn")
+To cite the software implementation of the R package 'abn' use:
+
+  Delucchi M, Furrer R, Kratzer G, Lewis F, Liechti J, Pittavino M, Cherneva K (2024). _abn: Modelling Multivariate Data with Additive Bayesian Networks_. R package version 3.1.3, <https://CRAN.R-project.org/package=abn>.
+
 To cite the methodology of the R package 'abn' use:
 
-  Kratzer G, Lewis F, Comin A, Pittavino M, Furrer R (2023). “Additive Bayesian Network Modeling with the R Package abn.” _Journal of Statistical Software_,
-  *105*(8), 1-41. doi:10.18637/jss.v105.i08 <https://doi.org/10.18637/jss.v105.i08>.
+  Kratzer G, Lewis F, Comin A, Pittavino M, Furrer R (2023). “Additive Bayesian Network Modeling with the R Package abn.” _Journal of Statistical Software_, *105*(8), 1-41. doi:10.18637/jss.v105.i08 <https://doi.org/10.18637/jss.v105.i08>.
 
-To cite an example of a typical ABN analysis use:
+To cite the application of mixed-effects ABN use:
 
-  Kratzer, G., Lewis, F.I., Willi, B., Meli, M.L., Boretti, F.S., Hofmann-Lehmann, R., Torgerson, P., Furrer, R. and Hartnack, S. (2020). Bayesian Network
-  Modeling Applied to Feline Calicivirus Infection Among Cats in Switzerland. Frontiers in Veterinary Science, 7, 73
+  Delucchi M, Liechti J, Spinner G, Furrer R (2024). “abn: Additive Bayesian Networks.” _Journal of Open Source Software_, *9*(101), 6822. R package version 3.1.3, <https://doi.org/10.21105/joss.06822>.
 
-To cite the software implementation of the R package 'abn' use:
+To cite an example of a typical ABN analysis use:
 
-  Furrer, R., Kratzer, G. and Lewis, F.I. (2023). abn: Modelling Multivariate Data with Additive Bayesian Networks. R package version 2.7-2.
-  https://CRAN.R-project.org/package=abn
+  Kratzer, G., Lewis, F.I., Willi, B., Meli, M.L., Boretti, F.S., Hofmann-Lehmann, R., Torgerson, P., Furrer, R. and Hartnack, S. (2020). Bayesian Network Modeling Applied to Feline Calicivirus Infection Among Cats in Switzerland. Frontiers
+  in Veterinary Science, 7, 73
 ```
 
 # License
@@ -720,6 +722,8 @@ The [abn website](https://r-bayesian-networks.org/) provides a comprehensive set
 
 ## Technical articles
 
+- Delucchi et al. (2024): [Additive Bayesian Networks. Journal of Open Source Software, 9(101), 6822](https://doi.org/10.21105/joss.06822)
+
 - Kratzer et al. (2023): [Additive Bayesian Network Modeling with the R Package abn](https://doi.org/10.18637/jss.v105.i08)
 
 - Kratzer et al. (2020) [Bayesian Networks modeling applied to Feline Calicivirus infection among cats in Switzerland](https://doi.org/10.3389/fvets.2020.00073)

diff --git a/inst/CITATION b/inst/CITATION
@@ -37,9 +37,12 @@ bibentry(bibtype = "Article",
                     person(given = "Reinhard", family = "Furrer", email = "[email protected]", role = "aut", comment = c(ORCID = "0000-0002-6319-2332"))),
           year = "2024",
           journal = "Journal of Open Source Software",
-          volume = "Accepted for publication",
+          publisher = "The Open Journal",
+          volume = "9",
+          number = "101",
+          pages = "6822",
           note = "R package version 3.1.3",
-          url = "https://joss.theoj.org/papers/1bbc43a2be86f5d3f831cedb5cf81812",
+          url = "https://doi.org/10.21105/joss.06822",
           header = "To cite the application of mixed-effects ABN use:"
 )
 

diff --git a/renv.lock b/renv.lock
@@ -1,6 +1,6 @@
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+    "Version": "4.4.1",
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@@ -106,14 +106,14 @@
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     "KernSmooth": {
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@@ -169,18 +169,18 @@
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@@ -190,7 +190,7 @@
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@@ -956,14 +956,14 @@
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@@ -1093,7 +1093,7 @@
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+      "Version": "1.47",
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@@ -1105,7 +1105,7 @@
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@@ -1148,7 +1148,7 @@
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@@ -1170,7 +1170,7 @@
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@@ -1578,14 +1578,14 @@
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@@ -2039,15 +2039,15 @@
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