bug fix in job name #116
Workflow file for this run
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| name: Create Docker image and publish to GH Packages | ||
| on: | ||
| push: | ||
| branches: [ main , 27-document-and-track-container-configuration] # create a new version whenever we push to main | ||
| schedule: | ||
| - cron: "12 2 2 * *" # run at 2:12 of the 2nd of every month | ||
| env: | ||
| DOCKER_REGISTRY: ghcr.io # where to register the image | ||
| REPO_PATH: github.com/furrer-lab/abn.git | ||
| # REPO_PATH: github.com:furrer-lab/abn.git # for private repo cloned via ssh | ||
| # Set the path to the package where the DESCRIPTION file can be found | ||
| PACKAGE_PATH: ${{ vars.PACKAGE_PATH || './' }} | ||
| JAGS: JAGS-4.3.2 | ||
| CHGLOG_RELEASE: git-chglog_0.15.4_linux_amd64 | ||
| CHGLOG_PATH: https://github.com/git-chglog/git-chglog/releases/download/v0.15.4 | ||
| jobs: | ||
| increment-tag: | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| contents: write | ||
| outputs: | ||
| VERSION: ${{ steps.version.outputs.version }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: '0' | ||
| - name: Auto increment calver version | ||
| uses: reecetech/[email protected] | ||
| id: version | ||
| with: | ||
| scheme: calver | ||
| build-and-push: | ||
| runs-on: ubuntu-latest | ||
| needs: increment-tag | ||
| env: | ||
| CUSTOM_TAG: "${{ needs.increment-tag.outputs.VERSION }}" | ||
| permissions: # for `GITHUB_TOKEN` | ||
| contents: read | ||
| packages: write | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| target-os: ['debian', 'fedora'] | ||
| compiler: ['gcc', 'clang'] | ||
| r-version: ['devel', 'release', 'patched'] | ||
| exclude: | ||
| - target-os: 'fedora' | ||
| r-version: 'release' | ||
| - target-os: 'fedora' | ||
| r-version: 'patched' | ||
| - compiler: 'clang' | ||
| r-version: 'patched' | ||
| - compiler: 'clang' | ||
| r-version: 'release' | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Log in to the registry | ||
| uses: docker/login-action@65b78e6e13532edd9afa3aa52ac7964289d1a9c1 | ||
| with: | ||
| registry: ${{ env.DOCKER_REGISTRY }} | ||
| username: ${{ github.actor }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
| - name: Extract tags and labels | ||
| id: meta | ||
| uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7 | ||
| with: | ||
| # TODO: set a proper name of the image (same as in context below) | ||
| images: ${{ env.DOCKER_REGISTRY}}/${{ format('{0}/{1}/{2}/{3}/abn', github.repository, matrix.target-os, matrix.compiler, matrix.r-version ) }} | ||
| tags: | # set Docker tags to git tags | ||
| type=raw,value=${{ env.CUSTOM_TAG }} | ||
| type=raw,value=latest,enable=${{ github.ref == format('refs/heads/{0}', 'main') }} | ||
| #type=semver,pattern={{version}} | ||
| # For private repo cloned via ssh we need a deploy key | ||
| # - name: Write the ssh key file | ||
| # run: | | ||
| # echo "${{ secrets.DEVEL_ABN_DEPLOY }}" >> ssh_key | ||
| # shell: bash | ||
| - name: Build and push | ||
| uses: docker/build-push-action@f2a1d5e99d037542a71f64918e516c093c6f3fc4 | ||
| with: | ||
| context: ${{ format('./containers/{0}/', matrix.target-os ) }} | ||
| push: true | ||
| tags: ${{ steps.meta.outputs.tags }} | ||
| labels: ${{ steps.meta.outputs.labels }} | ||
| build-args: | | ||
| TARGET_OS=${{ matrix.target-os }} | ||
| COMPILER=${{ matrix.compiler }} | ||
| R_VERSION=${{ matrix.r-version }} | ||
| PACKAGE_PATH=${{ env.PACKAGE_PATH}} | ||
| REPO_PATH=${{ env.REPO_PATH }} | ||
| JAGS=${{ env.JAGS}} | ||
| # For private repo cloned via ssh | ||
| # secret-files: | | ||
| # key=./ssh_key | ||
| container-integrity-and-config | ||
| runs-on: ubuntu-22.04 | ||
| needs: build-and-push | ||
| container: | ||
| image: ${{ vars.CONTAINER_SOURCE }}/${{ matrix.os }}/${{ matrix.compiler }}/${{ matrix.r-version }}/abn:${{ vars.CONTAINER_VERSION || 'latest' }} | ||
| credentials: | ||
| username: ${{ github.actor }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
| strategy: | ||
| matrix: | ||
| target-os: ['debian', 'fedora'] | ||
| compiler: ['gcc', 'clang'] | ||
| r-version: ['devel', 'release', 'patched'] | ||
| exclude: | ||
| - target-os: 'fedora' | ||
| r-version: 'release' | ||
| - target-os: 'fedora' | ||
| r-version: 'patched' | ||
| - compiler: 'clang' | ||
| r-version: 'patched' | ||
| - compiler: 'clang' | ||
| r-version: 'release' | ||
| fail-fast: false | ||
| steps: | ||
| - name: Write out configuration | ||
| run: | | ||
| Rscirpt -e "sessionInfo()" > docs/${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.r-version }}.md | ||
| Rscirpt -e "ip=as.data.frame(installed.packages()[,c(1,3:4)]);ip[is.na(ip$Priority),1:2,drop=FALSE]" >> docs/${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.r-version }}.md | ||
| - name: Commit config for container | ||
| uses: EndBug/add-and-commit@v9 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| with: | ||
| default_author: github_actions | ||
| message: "auto-update: container docs for ${{ matrix.os }}/${{ matrix.compiler }}/${{ matrix.r-version }}/abn" | ||
| add: "docs/${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.r-version }}.md" | ||
| auto-update-and-publish-tag: | ||
| runs-on: ubuntu-latest | ||
| needs: [ 'increment-tag', 'container-integrity-and-config' ] | ||
| permissions: | ||
| contents: write | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: '0' | ||
| - name: Get git-chglog and update CHANGELOG | ||
| run: | | ||
| wget ${{ env.CHGLOG_PATH }}/${{ env.CHGLOG_RELEASE}}.tar.gz # get the binary for the chglog | ||
| tar --extract --file=${{ env.CHGLOG_RELEASE}}.tar.gz git-chglog | ||
| git config user.email "[email protected]" | ||
| git config user.name "github_actions" | ||
| git tag -a ${{ steps.version.outputs.version }} -m 'interim tag for changelog' | ||
| ./git-chglog -o CHANGELOG.md # update the changelog file | ||
| git tag -d ${{ steps.version.outputs.version }} # remove the tag again | ||
| - name: Commit CHANGELOG.md update | ||
| uses: EndBug/add-and-commit@v9 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| with: | ||
| default_author: github_actions | ||
| message: "auto-update: CHANGELOG.md" | ||
| add: 'CHANGELOG.md' | ||
| tag: "${{ needs.increment-tag.outputs.VERSION }}" | ||
