Backport fix from GMOD/Chado#105 (#11)

Backport fix from GMOD/Chado#105

README.md

@@ -1,5 +1,7 @@
 # Chado Schema Builder
 
+[![Build Status](https://build.galaxyproject.eu/buildStatus/icon?job=usegalaxy-eu%2Fchado-schema-builder)](https://build.galaxyproject.eu/job/usegalaxy-eu/job/chado-schema-builder/)
+
 This project provides a dockerfile to automatically build the chado database
 dumps. These schema dumps are necessary due to how much time and memory the
 process of parsing ontologies takes. For older machines such as the author's

cvtermpath_fix.sql

@@ -1,5 +1,13 @@
 --- example: select * from fill_cvtermpath(7); where 7 is cv_id for an ontology
 --- fill path from the node to its children and their children
+
+--- Also a bugfix backported from https://github.com/GMOD/Chado/pull/105
+
+SELECT set_config('search_path',
+  string_agg(quote_ident(s),','),
+  false)
+FROM unnest(current_schemas(false)) s;
+
 CREATE OR REPLACE FUNCTION _fill_cvtermpath4node(BIGINT, BIGINT, BIGINT, BIGINT, INTEGER, BIGINT[]) RETURNS INTEGER AS
 '
 DECLARE
@@ -71,4 +79,26 @@ BEGIN
     RETURN 1;
 END;
 '
-LANGUAGE 'plpgsql';
+LANGUAGE 'plpgsql' SET SEARCH_PATH FROM CURRENT;
+
+CREATE OR REPLACE FUNCTION fill_cvtermpath(cv.name%TYPE) RETURNS INTEGER AS
+'
+DECLARE
+    cvname alias for $1;
+    cv_id   int;
+    rtn     int;
+BEGIN
+    SELECT INTO cv_id cv.cv_id from cv WHERE cv.name = cvname;
+    SELECT INTO rtn fill_cvtermpath(cv_id);
+    RETURN rtn;
+END;
+'
+LANGUAGE 'plpgsql' SET SEARCH_PATH FROM CURRENT;
+
+CREATE OR REPLACE FUNCTION boxrange (bigint, bigint) RETURNS box AS
+ 'SELECT box (create_point(CAST(0 AS bigint), $1), create_point($2,500000000))'
+LANGUAGE 'sql' IMMUTABLE SET SEARCH_PATH FROM CURRENT;
+
+CREATE OR REPLACE FUNCTION boxrange (bigint, bigint, bigint) RETURNS box AS
+ 'SELECT box (create_point($1, $2), create_point($1,$3))'
+LANGUAGE 'sql' IMMUTABLE SET SEARCH_PATH FROM CURRENT;