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Single cell Community of Practice page creation #2198

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merged 10 commits into from
Oct 5, 2023
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| Small Scale Servers | Admins of small scale Galaxy servers. |[<i class="fa fa-envelope" aria-hidden="true"></i>](https://lists.galaxyproject.org/lists/small-scale-admins.lists.galaxyproject.org/)|
| [Machine Learning](https://ml.usegalaxy.eu/) | A comprehensive set of data preprocessing, machine learning, deep learning and visualisation tools, and consolidated workflows for end-to-end machine learning analysis. | [<i class="fa fa-solid fa-graduation-cap"></i>](https://training.galaxyproject.org/training-material/topics/statistics/) [<i class="fa fa-external-link-alt" aria-hidden="true"></i>](https://ml.usegalaxy.eu/) |
| [Materials Science](https://materials.usegalaxy.eu/) | A Galaxy workbench with tools and workflows for materials science, including muon spectroscopy. | [<i class="fa fa-external-link-alt" aria-hidden="true"></i>](https://materials.usegalaxy.eu/) |
| Single cell <br> [Single-cell Workbench](https://singlecell.usegalaxy.eu) [Human cell atlas Workbench](https://humancellatlas.usegalaxy.eu)| Group of single cell tool developers, trainers and users to help connect outreach, user needs, and computationalists. | [<i class="fa fa-external-link-alt" aria-hidden="true"></i>](https://matrix.to/#/#usegalaxy-eu_single-cell-workflows:gitter.im) [<i class="fa fa-solid fa-graduation-cap"></i>](https://training.galaxyproject.org/training-material/topics/single-cell/) [<i class="fa fa-envelope" aria-hidden="true"></i>](https://lists.galaxyproject.org/lists/single-cell-cop.lists.galaxyproject.org/) |
| [Single cell](content/projects/singlecell/index.md) | Group of single cell tool developers, trainers and users to help connect outreach, user needs, and computationalists. | [<i class="fa fa-external-link-alt" aria-hidden="true"></i>](https://matrix.to/#/#usegalaxy-eu_single-cell-workflows:gitter.im) [<i class="fa fa-solid fa-graduation-cap"></i>](https://training.galaxyproject.org/training-material/topics/single-cell/) [<i class="fa fa-envelope" aria-hidden="true"></i>](https://lists.galaxyproject.org/lists/single-cell-cop.lists.galaxyproject.org/) |
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# Set up your own community

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---
description: "Users, developers, and trainers providing feedback and energy to improve and expand the Galaxy single cell capabilities."
autotoc: true
title: "Galaxy Single Cell Community of Practice"
---

We are a mix of users, developers, and trainers providing feedback and energy to improve and expand the Galaxy single cell capabilities. Do you use Galaxy single cell tools for scRNA-seq or beyond? Do you have feedback for us? Want to be a tester of new resources? Want to impact the future of single cell in Galaxy? Are you a developer looking for a place to play? Are you developing Galaxy single cell materials and want to stay aware of what others are doing in this field?

**Welcome to the Galaxy Single-Cell Community of Practice!**

## I'm just trying to learn to analyse my data, how did I get here?
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Hello user! You'll be interested in the following resources:

- [Learning pathway for getting to grips with Galaxy and single cell](https://training.galaxyproject.org/training-material/learning-pathways/intro_single_cell.html)
- [Single cell training material](https://training.galaxyproject.org/training-material/topics/single-cell/)
- Galaxy instance: [Single cell instance](https://singlecell.usegalaxy.eu) or Human Cell Atlas instance](https://humancellatlas.usegalaxy.eu)
- [Matrix channel for asking for help](https://matrix.to/#/#Galaxy-Training-Network_galaxy-single-cell:gitter.im)

Saying that, we'd absolutely love to have users feedback on their experiences to help us improve. You'd be very welcome to join the Community of Practice to help improve the Galaxy single cell space!

# What are the goals of the single cell community of practice?

🎯Goals
- Prevent work duplication
- Collaborate across pipeline, ensuring users feedback to developers
- Identify community needs
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- Tool & tutorial development
- Testing
- Build & support user community

# Who are we looking for?

Anyone with energy! We love hearing from users, developers, trainers, and everyone in between who is using or developing Galaxy for single cell analysis.

# How do we function?

**Meetings** We meet every 6 weeks (alternating USA and AU time zones) for 1 hour.

Our meeting agenda is:
- Random intro chatter & introductions
- Updates from Trello site (what people are working on / asking for help)
- 🐛Help/bugs
- Status reports & new stuff that’s happening
- Other cool stuff (example: Smorgasbord)
- Ongoing actions to send out

**Emails** We send out emails to the mailing list after each meeting, at the mid-way point between meetings, and the day before meetings as a reminder.

**Notes** We keep rolling notes on a googledoc and monitor our work on Trello.

**Collaborative Chat Forums** When people ask for help or are working across institutes, we set up chat sub-channels to bring them together.

**General Chat Forum** We have a chat forum to discuss news and ideas, and are represented in the Galaxy Community Reps chat group.

<iframe src="https://calendar.google.com/calendar/embed?src=f6b4dbe4aa3d7076e740e4198aa482d6b92b52129c9f867cfb49f7ac40450796%40group.calendar.google.com&ctz=Europe%2FLondon" style="border: 0" width="800" height="600" frameborder="0" scrolling="no"></iframe>

# How can you join & other important links

Start by joining our [💬Matrix channel](https://matrix.to/#/#usegalaxy-eu_single-cell-workflows) and introduce yourself! (Or you can just lurk there for a bit!)

- 📪[Mailing list](https://lists.galaxyproject.org/lists/single-cell-cop.lists.galaxyproject.org/)
- ✅[Trello site](https://trello.com/invite/b/KLVgHvCB/ATTI53fe3f6ea71737e3aa6570e5ed148a528698CA27/sccop-tool-wrapping-tutorial-development)
- 🗓️[SC-CoP Google Calendar](https://calendar.google.com/calendar/embed?src=f6b4dbe4aa3d7076e740e4198aa482d6b92b52129c9f867cfb49f7ac40450796%40group.calendar.google.com&ctz=Europe%2FLondon) <-- Subscribe!
- 📝[Meeting Notes doc](https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtfmHSA/edit?usp=sharing) <--- There's a section here called 'New here?' that gives tips on how to start contributing as well!
- 🧑🏽‍🏫[User Matrix Channel](https://matrix.to/#/#Galaxy-Training-Network_galaxy-single-cell:gitter.im)

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## Key words

Single-cell
Single cell
Single-cell RNA-Sequencing
Single-cell RNA-seq
scRNA-seq
snRNA-seq
10x
Single cell biology
Single cell multiomics
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