Add a test that a tool with id kraken2000 will not inherit parameters for kraken2 #421
Workflow file for this run
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| name: tests | |
| # Run this workflow every time a new commit pushed to your repository | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| # Set the job key. The key is displayed as the job name | |
| # when a job name is not provided | |
| lint: | |
| name: Lint code | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.10' ] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip dir | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('**/setup.py', '**/requirements.txt', '**/requirements_test.txt') }}-lint | |
| - name: Cache tox dir | |
| uses: actions/cache@v3 | |
| with: | |
| path: .tox | |
| key: tox-cache-${{ matrix.python-version }}-${{ hashFiles('**/setup.py', '**/requirements.txt', '**/requirements_test.txt') }}-lint | |
| - name: Install required packages | |
| run: pip install tox | |
| - name: Run tox | |
| run: tox -e lint | |
| py38: | |
| # Name the Job | |
| name: Tox tests | |
| needs: lint | |
| # Set the type of machine to run on | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip dir | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('**/setup.py', '**/requirements.txt', '**/requirements_test.txt') }}-py310 | |
| - name: Cache tox dir | |
| uses: actions/cache@v3 | |
| with: | |
| path: .tox | |
| key: tox-cache-${{ matrix.python-version }}-${{ hashFiles('**/setup.py', '**/requirements.txt', '**/requirements_test.txt') }}-py310 | |
| - name: Install required packages | |
| run: pip install tox | |
| - name: Run tox | |
| run: tox -e py${{ matrix.python-version }} | |
| env: | |
| PYTHONUNBUFFERED: "True" | |
| - name: Coveralls | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| flag-name: run-${{ matrix.python-version }} |