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update codemeta to codemeta v3.0
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bneron committed May 15, 2024
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169 changes: 83 additions & 86 deletions codemeta.json
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{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"license": "https://spdx.org/licenses/GPL-3.0",
"codeRepository": "git+https://github.com/gem-pasteur/Integron_Finder",
"dateModified": "2024-05-02",
"downloadUrl": "https://files.pythonhosted.org/packages/4a/39/816165ed051a41560c9167590bf974a83de34e5a43509e9501f79cdf4ba4/integron_finder-2.0.2.tar.gz",
"issueTracker": "https://github.com/gem-pasteur/Integron_Finder/issues",
"name": "Integron_Finder",
"version": "2.0.4",
"description": "Integron_Finder is a program that detects integrons in DNA sequences.",
"@context": "https://w3id.org/codemeta/3.0",
"type": "SoftwareSourceCode",
"applicationCategory": "Bioinformatic",
"funding": "ANR-16-CONV-0005, EQU201903007835, ANR-10-LABX-62-IBEID",
"developmentStatus": "active",
"referencePublication": "https://doi.org/10.3390/microorganisms10040700",
"funder": {
"@type": "Organization",
"name": "Institut Pasteur, CNRS"
},
"keywords": [
"integron",
"genomic",
"antibiotic resistance",
"bioinformatic"
],
"programmingLanguage": [
"Python 3"
],
"operatingSystem": [
"Linux",
"macOS"
],
"softwareRequirements": [
"- Python >=3.10,<=3.12",
"- Pandas >=2",
"- Numpy >=1.26",
"- Biopython >=1.82,<=1.83",
"- Matplotlib >=3.8",
"- colorlog",
"- HMMER >=3.1b2,<=3.3.2",
"- INFERNAL >=1.1.2,<=1.1.4",
"- Prodigal >=2.6.2,<=V2.6.3"
],
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],
"author": [
{
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"@id": "https://orcid.org/0000-0002-0220-0482",
"givenName": "Bertrand",
"familyName": "Néron",
"email": "[email protected]",
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"type": "Person",
"affiliation": {
"@type": "Organization",
"type": "Organization",
"name": "Bioinformatics and Biostatistics Hub, Institut Pasteur, Université de Paris Cité, 75015 Paris, France"
}
},
"email": "[email protected]",
"familyName": "Néron",
"givenName": "Bertrand"
},
{
"@type": "Person",
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"familyName": "Cury",
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"id": "_:author_2",
"type": "Person",
"affiliation": {
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"type": "Organization",
"name": "Laboratoire Interdisciplinaire des Sciences du Numérique, Université Paris-Saclay, CNRS UMR 9015, INRIA, 91400 Orsay, France"
}
},
"email": "[email protected]",
"familyName": "Cury",
"givenName": "Jean"
},
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"email": "[email protected]",
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"type": "Person",
"affiliation": {
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"type": "Organization",
"name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France"
}
},
"email": "[email protected]",
"familyName": "Rocha",
"givenName": "Eduardo"
}
],
"codeRepository": "git+https://github.com/gem-pasteur/Integron_Finder",
"contributor": [
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"givenName": "Eloi",
"familyName": "Littner",
"email": "[email protected]",
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"type": "Person",
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},
"email": "[email protected]",
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},
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"email": "[email protected]",
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"type": "Person",
"affiliation": {
"@type": "Organization",
"type": "Organization",
"name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France / Ecole Doctorale FIRE–Programme Bettencourt, CRI, 75004 Paris, France"
}
},
"email": "[email protected]",
"familyName": "Haudiquet",
"givenName": "Matthieu"
},
{
"@type": "Person",
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"email": "[email protected]",
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"type": "Person",
"affiliation": {
"@type": "Organization",
"type": "Organization",
"name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France / Collège Doctoral, Sorbonne Université, 75005 Paris, France"
}
},
"email": "[email protected]",
"familyName": "Perrin",
"givenName": "Amandine"
}
]
],
"dateModified": "2024-05-02",
"description": "Integron_Finder is a program that detects integrons in DNA sequences.",
"downloadUrl": "https://files.pythonhosted.org/packages/4a/39/816165ed051a41560c9167590bf974a83de34e5a43509e9501f79cdf4ba4/integron_finder-2.0.2.tar.gz",
"funder": {
"type": "Organization",
"name": "Institut Pasteur, CNRS"
},
"keywords": [
"integron",
"genomic",
"antibiotic resistance",
"bioinformatic"
],
"license": "https://spdx.org/licenses/GPL-3.0",
"name": "Integron_Finder",
"operatingSystem": [
"Linux",
"macOS"
],
"programmingLanguage": "Python 3",
"relatedLink": "https://integronfinder.readthedocs.io/en/v2.0.4/",
"softwareRequirements": [
"- Python >=3.10,<=3.12",
"- Pandas >=2",
"- Numpy >=1.26",
"- Biopython >=1.82,<=1.83",
"- Matplotlib >=3.8",
"- colorlog",
"- HMMER >=3.1b2,<=3.3.2",
"- INFERNAL >=1.1.2,<=1.1.4",
"- Prodigal >=2.6.2,<=V2.6.3"
],
"version": "2.0.4",
"developmentStatus": "active",
"funding": "ANR-16-CONV-0005, EQU201903007835, ANR-10-LABX-62-IBEID",
"issueTracker": "https://github.com/gem-pasteur/Integron_Finder/issues",
"referencePublication": "https://doi.org/10.3390/microorganisms10040700"
}

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