Merge pull request #118 from generable/pkpd-data-prep #186
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| pull_request: | |
| branches: | |
| - main | |
| - dev | |
| name: R-CMD-check | |
| defaults: | |
| run: | |
| shell: Rscript {0} | |
| jobs: | |
| R-CMD-check-no-creds: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| GECO_API_TEST_USER: ${{ secrets.TEST_USER }} | |
| GECO_API_TEST_URL: ${{ secrets.TEST_URL }} | |
| GECO_API_TEST_PASSWORD: ${{ secrets.TEST_PASSWORD }} | |
| GECO_API_TEST_PROJECT: ${{ secrets.TEST_PROJECT }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| Ncpus: '1L' | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Get Date | |
| id: get-date | |
| shell: bash | |
| run: | | |
| echo "::set-output name=year-week::$(date -u "+%Y-%U")" | |
| echo "::set-output name=date::$(date -u "+%F")" | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| id: r-package-cache | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.os }}-${{ steps.setup-r.outputs.installed-r-version }}-${{ steps.get-date.outputs.year-week }}-3 | |
| - name: Install remotes | |
| if: steps.r-package-cache.outputs.cache-hit != 'true' | |
| run: install.packages("remotes") | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| shell: bash | |
| run: | | |
| . /etc/os-release | |
| while read -r cmd | |
| do | |
| echo "$cmd" | |
| sudo $cmd | |
| done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | |
| - name: Install Package + deps | |
| run: remotes::install_local(dependencies = TRUE, force = TRUE) | |
| - name: Install rcmdcheck | |
| run: remotes::install_cran("rcmdcheck") | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check') | |
| - name: Show testthat output | |
| if: always() | |
| shell: bash | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| - name: Don't use tar from old Rtools to store the cache | |
| if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3') }} | |
| shell: bash | |
| run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |