Merge pull request #53 from genome-nexus/rmadupuri-patch-1

Add missing function that prints warnings for problematic files
genome-nexus · May 19, 2023 · 06de075 · 06de075
2 parents 247b08f + 056da1c
commit 06de075
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/vcf2maf.py b/vcf2maf.py
@@ -27,6 +27,7 @@
 import re
 import json
 from chardet import detect
+import warnings
 
 # ---------------------------- GLOBALS ----------------------------
 
@@ -863,6 +864,9 @@ def create_maf_record_from_vcf(sample_id, center_name, sequence_source, vcf_data
 def is_missing_data_value(value):
 	return (value in NULL_OR_MISSING_VALUES)
 
+def print_warning(message):
+    print(message)
+
 def process_datum(value):
 	"""
 		Returns a cleaned up data value.