fix: remove pindel decompose and update filters #166
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Lint | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| lint: | |
| name: Lint workflow | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| - name: Install requirements | |
| run: | | |
| pip install -r requirements.txt | |
| - name: Linting | |
| working-directory: .tests/integration | |
| run: | | |
| snakemake -s ../../workflow/Snakefile \ | |
| --configfile ../../config/config.yaml config/config.yaml \ | |
| --config POPPY_HOME=../.. \ | |
| --lint |