Add new classes and update existing

src/main/java/it/geoframe/blogspot/buffer/buffertowriter/FreezingThawingBuffer1D.java

@@ -102,13 +102,13 @@ public void solve() {
 			tempVariable.add(inputVariable.get(3).clone());
 
 			// errorEnergy
-			tempVariable.add(inputVariable.get(3).clone());
+			tempVariable.add(inputVariable.get(4).clone());
 
 			// heat flux at the top of the  domain 
-			tempVariable.add(inputVariable.get(4).clone());
+			tempVariable.add(inputVariable.get(5).clone());
 
 			// heat flux at the bottom of the  domain
-			tempVariable.add(inputVariable.get(5).clone());
+			tempVariable.add(inputVariable.get(6).clone());
 
 
 			myVariable.put(inputDate,(ArrayList<double[]>) tempVariable.clone());

src/main/java/it/geoframe/blogspot/buffer/buffertowriter/HeatAdvectionDiffusionBuffer1D.java

@@ -0,0 +1,124 @@
+/*
+ * GNU GPL v3 License
+ *
+ * Copyright 2019 Niccolò Tubini
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+package it.geoframe.blogspot.buffer.buffertowriter;
+
+import java.util.ArrayList;
+import java.util.LinkedHashMap;
+
+import oms3.annotations.*;
+
+@Description("Buffer for 1D heat diffusion simulation. This component temporarily the output and then passes them to "
+		+ "the writer component")
+@Documentation("")
+@Author(name = "Niccolo' Tubini, Riccardo Rigon", contact = "[email protected]")
+@Keywords("Diffusion, heat equation, 1D problem")
+//@Label("GEOframe.B")
+@Name("HeatDiffusionBuffer1D")
+@Status(Status.CERTIFIED)
+@License("General Public License Version 3 (GPLv3)")
+
+public class HeatAdvectionDiffusionBuffer1D {
+
+	@Description("Output variables of the current time step")
+	@In 
+	@Unit ("-")
+	public ArrayList<double[]> inputVariable;
+
+	@Description("Date of the current time step")
+	@In 
+	@Unit ("YYYY-MM-DD HH:mm")
+	public String inputDate;
+
+	@Description("Boolean value controlling the buffer component")
+	@In 
+	@Unit ("-")
+	public boolean doProcessBuffer;
+
+	@Description("Numeber of time step every which the ouptut is written to the disk."
+			+ "Default is 1")
+	@In 
+	public int writeFrequency = 1;
+
+
+	@Description("Output variable. This variable is passed to the writer component")
+	@Out
+	@Unit ()
+	public LinkedHashMap<String,ArrayList<double[]>> myVariable = new LinkedHashMap<String,ArrayList<double[]>>();
+
+
+
+	private int step=0;
+	private ArrayList<double[]> tempVariable;
+
+
+	/**
+	 * Store the output in LinkedHashMap<String,ArrayList<double[]>>
+	 */
+	@Execute
+	public void solve() {
+
+		if(step==0){
+
+			tempVariable = new ArrayList<double[]>();
+
+		}
+
+
+		if( ((step-1)%writeFrequency) == 0 || step == 1) {
+
+			myVariable.clear();
+
+		}
+
+		if(doProcessBuffer== true) {
+
+			// water suction
+			tempVariable.add(inputVariable.get(0).clone());
+
+			// temperature
+			tempVariable.add(inputVariable.get(1).clone());
+
+			// theta_w
+			tempVariable.add(inputVariable.get(2).clone());
+
+			// darcy velocities
+			tempVariable.add(inputVariable.get(3).clone());
+
+			// heat fluxes
+			tempVariable.add(inputVariable.get(4).clone());
+
+			// errorEnergy
+			tempVariable.add(inputVariable.get(5).clone());
+
+			// errorVolume
+			tempVariable.add(inputVariable.get(6).clone());
+
+
+			myVariable.put(inputDate,(ArrayList<double[]>) tempVariable.clone());
+
+			tempVariable.clear();
+		}
+		step++;
+
+
+	}
+
+
+}

src/main/java/it/geoframe/blogspot/buffer/buffertowriter/HeatDiffusionBufferWithSurfaceEnergyBudget1D.java

@@ -121,9 +121,12 @@ public void solve() {
 
 			// Sensible heat flux 
 			tempVariable.add(inputVariable.get(10).clone());
+
+			// actual latent heat flux 
+			tempVariable.add(inputVariable.get(11).clone());
 
 			// heat flux at the bottom of the  domain
-			tempVariable.add(inputVariable.get(11).clone());
+			tempVariable.add(inputVariable.get(12).clone());
 
 
 			myVariable.put(inputDate,(ArrayList<double[]>) tempVariable.clone());

src/main/java/it/geoframe/blogspot/buffer/buffertowriter/HeatDiffusionFreezingThawingBufferWithSurfaceEnergyBudget1D.java

@@ -0,0 +1,145 @@
+/*
+ * GNU GPL v3 License
+ *
+ * Copyright 2019 Niccolò Tubini
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+package it.geoframe.blogspot.buffer.buffertowriter;
+
+import java.util.ArrayList;
+import java.util.LinkedHashMap;
+
+import oms3.annotations.*;
+
+@Description("Buffer for 1D heat diffusion simulation. This component temporarily the output and then passes them to "
+		+ "the writer component")
+@Documentation("")
+@Author(name = "Niccolo' Tubini, Riccardo Rigon", contact = "[email protected]")
+@Keywords("Diffusion, heat equation, 1D problem")
+//@Label("GEOframe.B")
+@Name("HeatDiffusionBuffer1D")
+@Status(Status.CERTIFIED)
+@License("General Public License Version 3 (GPLv3)")
+
+public class HeatDiffusionFreezingThawingBufferWithSurfaceEnergyBudget1D {
+
+	@Description("Output variables of the current time step")
+	@In 
+	@Unit ("-")
+	public ArrayList<double[]> inputVariable;
+
+	@Description("Date of the current time step")
+	@In 
+	@Unit ("YYYY-MM-DD HH:mm")
+	public String inputDate;
+
+	@Description("Boolean value controlling the buffer component")
+	@In 
+	@Unit ("-")
+	public boolean doProcessBuffer;
+
+	@Description("Numeber of time step every which the ouptut is written to the disk."
+			+ "Default is 1")
+	@In 
+	public int writeFrequency = 1;
+
+
+	@Description("Output variable. This variable is passed to the writer component")
+	@Out
+	@Unit ()
+	public LinkedHashMap<String,ArrayList<double[]>> myVariable = new LinkedHashMap<String,ArrayList<double[]>>();
+
+
+
+	private int step=0;
+	private ArrayList<double[]> tempVariable;
+
+
+	/**
+	 * Store the output in LinkedHashMap<String,ArrayList<double[]>>
+	 */
+	@Execute
+	public void solve() {
+
+		if(step==0){
+
+			tempVariable = new ArrayList<double[]>();
+
+		}
+
+
+		if( ((step-1)%writeFrequency) == 0 || step == 1) {
+
+			myVariable.clear();
+
+		}
+
+		if(doProcessBuffer== true) {
+
+			// temperature
+			tempVariable.add(inputVariable.get(0).clone());
+
+			// adimensional water content
+			tempVariable.add(inputVariable.get(1).clone());
+
+			// adimensional ice content
+			tempVariable.add(inputVariable.get(2).clone());
+
+			// internal energy
+			tempVariable.add(inputVariable.get(3).clone());
+
+			// diffusion heat flux
+			tempVariable.add(inputVariable.get(4).clone());
+
+			// errorEnergy
+			tempVariable.add(inputVariable.get(5).clone());
+
+			// air temperature 
+			tempVariable.add(inputVariable.get(6).clone());
+
+			// Outgoing short-wave 
+			tempVariable.add(inputVariable.get(7).clone());
+
+			// Incoming short-wave 
+			tempVariable.add(inputVariable.get(8).clone());
+
+			// Outgoing long-wave 
+			tempVariable.add(inputVariable.get(9).clone());
+
+			// Incoming long-wave 
+			tempVariable.add(inputVariable.get(10).clone());
+
+			// Sensible heat flux 
+			tempVariable.add(inputVariable.get(11).clone());
+
+			// actual latent heat flux 
+			tempVariable.add(inputVariable.get(12).clone());
+
+			// heat flux at the bottom of the  domain
+			tempVariable.add(inputVariable.get(13).clone());
+
+
+			myVariable.put(inputDate,(ArrayList<double[]>) tempVariable.clone());
+
+			tempVariable.clear();
+		}
+		step++;
+
+
+	}
+
+
+}