paper [skip ci]

gher-uliege · Jan 17, 2025 · ad14ad5 · ad14ad5
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diff --git a/notebooks/1-Intro/02-Julia-introduction.ipynb b/notebooks/1-Intro/02-Julia-introduction.ipynb
diff --git a/notebooks/1-Intro/03-netCDF.ipynb b/notebooks/1-Intro/03-netCDF.ipynb
@@ -19,8 +19,6 @@
    "source": [
     "using NCDatasets\n",
     "using Downloads\n",
-    "using JupyterFormatter\n",
-    "enable_autoformat()\n",
     "include(\"../config.jl\")"
    ]
   },

diff --git a/notebooks/3-Analysis/nn-Sigmalayers.ipynb b/notebooks/3-Analysis/nn-Sigmalayers.ipynb
@@ -31,8 +31,6 @@
     "using Random\n",
     "using Interpolations\n",
     "using Roots\n",
-    "using JupyterFormatter\n",
-    "enable_autoformat()\n",
     "include(\"../config.jl\")"
    ]
   },

diff --git a/notebooks/5-AdvancedTopics/20-Turtles-Density-map.ipynb b/notebooks/5-AdvancedTopics/20-Turtles-Density-map.ipynb
@@ -25,8 +25,6 @@
     "using DelimitedFiles\n",
     "using LinearAlgebra\n",
     "using Random\n",
-    "using JupyterFormatter\n",
-    "enable_autoformat()\n",
     "include(\"../config.jl\")"
    ]
   },

diff --git a/notebooks/5-AdvancedTopics/Lshape.ipynb b/notebooks/5-AdvancedTopics/Lshape.ipynb
@@ -20,9 +20,7 @@
     "using LinearAlgebra\n",
     "using DIVAnd\n",
     "using Makie, CairoMakie\n",
-    "using Statistics\n",
-    "using JupyterFormatter\n",
-    "# enable_autoformat()"
+    "using Statistics\n"
    ]
   },
   {

diff --git a/notebooks/6-UnderConstruction/interp_section.ipynb b/notebooks/6-UnderConstruction/interp_section.ipynb
diff --git a/notebooks/6-UnderConstruction/open-boundary-conditions.ipynb b/notebooks/6-UnderConstruction/open-boundary-conditions.ipynb
@@ -58,8 +58,6 @@
    "outputs": [],
    "source": [
     "using DIVAnd\n",
-    "using JupyterFormatter\n",
-    "enable_autoformat()\n",
     "DIVAnddir = pathof(DIVAnd);\n",
     "exampledir = joinpath(dirname(DIVAnddir), \"../examples/\")\n",
     "isdir(exampledir)"

diff --git a/paper.md b/paper.md
@@ -75,6 +75,13 @@ Since the notebooks require input data files (mainly bathymetry and observations
 
 Following our experience with users, for the creation of plots, the Makie module [@danisch:2021] (along with `GeoMakie` for the maps) was selected to replce `PyPlot` (along with `Cartopy` [@Cartopy:2010] for the maps), which is based on the Python Matplotlib module [@hunter:2007]. Indeed, the import of PyPlot in the notebooks often generated errors on the user's machine, with sensitivity to the operating system and the pre-existing Python installation(s).
 
+## Users
+
+Scientists, data analysis and experts, hence the content has to be taylored.
+Among the applications: EMODnet products (link to Chemistry + link Tom's paper 2025)
++ applications 
+https://doi.org/10.5194/essd-15-225-2023
+
 # Figures
 
 Figures can be included like this: ![Example figure.](figure.png)