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Add NGFF spec version to --version output #155

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merged 2 commits into from
May 19, 2022
Merged

Add NGFF spec version to --version output #155

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33d461b
Add NGFF spec version to `--version` output
melissalinkert May 16, 2022
ba198b9
Also store NGFF_VERSION in plate metadata
sbesson May 17, 2022
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6 changes: 5 additions & 1 deletion src/main/java/com/glencoesoftware/bioformats2raw/Converter.java
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Original file line number Diff line number Diff line change
Expand Up @@ -115,6 +115,9 @@ public class Converter implements Callable<Void> {
/** Version of the bioformats2raw layout. */
public static final Integer LAYOUT = 3;

/** NGFF specification version.*/
public static final String NGFF_VERSION = "0.4";

@Parameters(
index = "0",
arity = "1",
Expand Down Expand Up @@ -426,6 +429,7 @@ public Void call() throws Exception {
).orElse("development");
System.out.println("Version = " + version);
System.out.println("Bio-Formats version = " + FormatTools.VERSION);
System.out.println("NGFF specification version = " + NGFF_VERSION);
return null;
}

Expand Down Expand Up @@ -1570,7 +1574,7 @@ private void setSeriesLevelMetadata(int series, int resolutions)
multiscale.put("type", downsampling.getName());
}
multiscale.put("metadata", metadata);
multiscale.put("version", nested ? "0.4" : "0.1");
multiscale.put("version", nested ? NGFF_VERSION : "0.1");
multiscales.add(multiscale);

IFormatReader v = null;
Expand Down