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Update readNexus file path in generateLphyScripts process
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glstott committed May 16, 2024
1 parent 1ce9bb1 commit 015d46f
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2 changes: 1 addition & 1 deletion nextflow/simulation.nf
Original file line number Diff line number Diff line change
Expand Up @@ -151,7 +151,7 @@ process generateLphyScripts {
data {
// Specify options for reading the date information from file
options = {ageDirection="forward", ageRegex=".*_.*_(\d*\.\d+|\d+\.\d*)$"};
D = readNexus(file="data/simulated.nex", options=options);
D = readNexus(file="!{seqs}", options=options);
// Retrieve number of sites in alignment and taxa names
L = D.nchar();
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