Version 2.3.1

• Do not use deprecated distutils with Python. New argument to configure: --enable-python-binding=sys|user
• Fix for compiling with GCC 12
• Enable reproducible builds with environment variable SOURCE_DATE_EPOCH

Version 2.3.0

• Fix bug with smaller k-mers

• Code is now dual licensed BSD3 / GPL3

• Proper handling of DOS line ending

• Added min, max, jaccard merging switches

• Fixed compilation warnings/errors with gcc-5, gcc-8 and clang

In addition to the source code jellyfish-2.3.0.tar.gz, we provide a Linux static binary.

Version 1.1.12

This is an update to version 1 of Jellyfish. It does not bring any new features, only fixes to compile on newer environment.

In addition to the source release jellyfish-1.1.12.tar.gz, we provide binaries for linux and for macosx.

Version 2.2.10

• Fix compilation on Mac (aligned_alloc)
• Fixed script installation without autoconf/automake. Provide setup.py, extconf.rb and Makefile.PL in distribution.

In addition to the source distribution jellyfish-2.2.10.tar.gz, we provide static binaries for linux and macosx.

Version 2.2.9

Fixes bugs in compilation / testing:

• better detection on powerpc
• fixed bug in testing on powerpc and arm architectures

Version 2.2.8

• 'jellyfish' Python module renamed 'dna-jellyfish' to avoid collision with another package in Debian.
• fixed compilation on cygwin.
• fixed bug with k=7 or 8.

Version 2.2.7

• Read sequence from SAM/BAM/CRAM files. This feature is available if ./configure finds htslib. If pkg-config --exists htslib && echo OK prints OK, htslib is found on your system. Otherwise, adjust PKG_CONFIG_PATH.
• Better detection of SSE support
• Fixed Makefile in the examples directory

(Download jellyfish-2.2.7.tar.gz, NOT the automatically generate Source code file)

Release 2.2.6

• Fix compilation warnings/errors with newer version of gcc (5.3 & 6.1).

(Download jellyfish-2.2.6.tar.gz, NOT the automatically generate Source code file)

Release 2.2.5

• Fix bug in parsing function that made it stop on sequences that consist of only empty lines.
• New methods in bindings to enumerate the mers of a string.

Script binding compilation

Fixed many problems with the compilations of the SWIG script bindings.