Update FSR_QC.csv #460

anjuraj15 · 2024-01-22T16:11:31Z

Resolves #454
Update FSR_QC.CSV - issue 454 EuBIC-MS

Update FSR_QC.CSV - issue 454 EuBIC-MS

github-actions · 2024-01-22T16:11:46Z

Here are the changes in FSR_QC.csv:

		1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
-	1. issue number	1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
+		1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
+	454	Anjana Elapavalore	0000-0002-0295-6618	EuBIC-MS \| EuBIC-MS (European Bioinformatics Community for Mass Spectrometry)	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw#EuBIC-MS	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw		Y		Y	Y		F	A	Accept

rbramley · 2024-01-22T16:20:42Z

Hi @anjuraj15 - I've modified the PR comment to link the issue.

rbramley · 2024-01-22T16:29:03Z

FSR_QC.csv

@@ -1,4 +1,4 @@
-1. issue number,1.  Person name,1. ORCID,1. FSR long name,1. FSR thing,1. FSR np identifier,1. URI of duplicate(s) (multiple separated by ';'),1. Links correct,1. Proposed Links,1. Definition ok,1. FSR types ok,1. FAIRSharing DOI to be added,1. FSR creator in pubinfo (yellow):  FIP Wizard (F) or the ORCID,1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D),1. Proposed changes:,2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D),2. URI of updated FSR,"2. if FSR is useless, check affected FIPs or SIPs (title)",2. Updated (U) /Deleted (D) entry in FIP/SIP
+ ,1.  Person name,1. ORCID,1. FSR long name,1. FSR thing,1. FSR np identifier,1. URI of duplicate(s) (multiple separated by ';'),1. Links correct,1. Proposed Links,1. Definition ok,1. FSR types ok,1. FAIRSharing DOI to be added,1. FSR creator in pubinfo (yellow):  FIP Wizard (F) or the ORCID,1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D),1. Proposed changes:,2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D),2. URI of updated FSR,"2. if FSR is useless, check affected FIPs or SIPs (title)",2. Updated (U) /Deleted (D) entry in FIP/SIP


The header row of the CSV has accidentally been changed. The first column header "1. issue number" will need to be reinstated.

rbramley · 2024-01-22T16:31:09Z

FSR_QC.csv

@@ -17,3 +17,4 @@
 352,Barbara Magagna,0000-0003-2195-3997,Darwin Core,http://purl.org/np/RAaSo_0hEIHE2SUOsdN-Y27AfIp9Kf-YI-lrvDYORo9JA#DwC,http://purl.org/np/RAaSo_0hEIHE2SUOsdN-Y27AfIp9Kf-YI-lrvDYORo9JA,"http://purl.org/np/RAdf9taM_Gyq2-WavUq3CxaVIvsHockMXzonj3W_igNhM,http://purl.org/np/RABFB5JSqq0yM8qBWjlsvMJD-w3sCnOQlw7Sdb0Oc-xmU,http://purl.org/np/RAFmqYVBtOTURhXkRP0EHLqMV5HBXa5nrvHJS9SxTmwhg",,,,,,0000-0001-8050-0299,D,,D,,N/A,
 147,Barbara Magagna,0000-0003-2195-3997,DEIMS-SDR_Site_Metadata_Model,http://purl.org/np/RAS95nqgBVT5tVaQiUfCwgFWjxIiwxtkZlkeMIRLDw9KU#DEIMS-SDR_SMM,http://purl.org/np/RAktO6jJg-krEZKPkHe2rZrymGybzgM-EaS2mm1TTTh10,,N,,N,Y,,F,I,"Improve label, definition with more details",I,http://purl.org/np/RAScP6OoU6ybnuVBXFumbMCg8eOGy4I6p_LUQaFo8jTPM,,
 423,Barbara Magagna,0000-0003-2195-3997,DataOne,http://purl.org/np/RAU2z2ehbJpnRHujQ5WnovRc2RrSI9nn6qbJ-P4OQt_sQ#DataONE,http://purl.org/np/RAo5M3uFEF2OeBUvfcXESfGBKng9zAu8M6OsKZBeSVyRY,,N,,Y,Y,,F,I,"Improve label to DataONE data management platform, change access URL to https://search.dataone.org/data",I,http://purl.org/np/RAKk8fx2D_JUEYhovoh5Jqz4-YAAq-qh81Ig14vtWFylk,,
+454,Anjana Elapavalore,0000-0002-0295-6618,EuBIC-MS | EuBIC-MS (European Bioinformatics Community for Mass Spectrometry),http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw#EuBIC-MS,http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw,,Y,,Y,Y,,F,A,Accept,,,,


In terms of the links being correct, I'm not convinced as I get a 404 for https://w3id.org/gff/fip/terms/Mature-community and a 504 for https://aims.fao.org/aos/agrovoc/c_4318 - this might need escalation via @mabablue

"Definition ok" should be 0 (FIC supercommunity incorrect)
"FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID" should be Parul's ORCID
proposal should be "I" (improve)

hi Robin, this link: https://w3id.org/gff/fip/terms/Mature-community is not yet active but will be this week
so please accept it

@rbramley the agrovoc is a famous terminology but actually it is not resolving properly ... I would not worry too much at this stage, and accept it... we are using the srao ontology from FAIRSharing that imported that concept

@burgerga I completely agree with you. Parul has put in a supercommunity by adding a string.. "promeotics" instead of choosing a nanopublication (but in fact that community does not yet exist as nanopublication. So it needs improvement, but without the mention of the super-community.

burgerga · 2024-01-22T17:23:40Z

@anjuraj15 You forget to assign me reviewer in the PR ;)

@rbramley I think it's because it's created from nanodash, and not the FIP wizard, the FIP wizard does not ask for maturity.
@anjuraj15 This should also be fixed in the FSR_QC.csv

Additonally, this FIC lists sub:proteomics as super community, but I think this is an error (the creator likely made a search, but forgot to remove the search term). Does anyone know Parul's Github handle? Because it's easiest if she fixes this

anjuraj15 · 2024-01-22T17:31:10Z

@burgerga Thank you for the comments. I am trying to understand the workflow behind the FSR qualification and sorry if I messed it up. So just to see if I got it right.. I make the changes to the CSV and once I commit the changes should I create a new pull request?

burgerga · 2024-01-22T17:44:34Z

No problem :)
You can make the changes, and commit and push on the issue_454_prov branch, it will automatically show up in this pull request, no need to create a new one

burgerga · 2024-01-22T17:55:33Z

FSR_QC.csv

@@ -17,3 +17,4 @@
 352,Barbara Magagna,0000-0003-2195-3997,Darwin Core,http://purl.org/np/RAaSo_0hEIHE2SUOsdN-Y27AfIp9Kf-YI-lrvDYORo9JA#DwC,http://purl.org/np/RAaSo_0hEIHE2SUOsdN-Y27AfIp9Kf-YI-lrvDYORo9JA,"http://purl.org/np/RAdf9taM_Gyq2-WavUq3CxaVIvsHockMXzonj3W_igNhM,http://purl.org/np/RABFB5JSqq0yM8qBWjlsvMJD-w3sCnOQlw7Sdb0Oc-xmU,http://purl.org/np/RAFmqYVBtOTURhXkRP0EHLqMV5HBXa5nrvHJS9SxTmwhg",,,,,,0000-0001-8050-0299,D,,D,,N/A,
 147,Barbara Magagna,0000-0003-2195-3997,DEIMS-SDR_Site_Metadata_Model,http://purl.org/np/RAS95nqgBVT5tVaQiUfCwgFWjxIiwxtkZlkeMIRLDw9KU#DEIMS-SDR_SMM,http://purl.org/np/RAktO6jJg-krEZKPkHe2rZrymGybzgM-EaS2mm1TTTh10,,N,,N,Y,,F,I,"Improve label, definition with more details",I,http://purl.org/np/RAScP6OoU6ybnuVBXFumbMCg8eOGy4I6p_LUQaFo8jTPM,,
 423,Barbara Magagna,0000-0003-2195-3997,DataOne,http://purl.org/np/RAU2z2ehbJpnRHujQ5WnovRc2RrSI9nn6qbJ-P4OQt_sQ#DataONE,http://purl.org/np/RAo5M3uFEF2OeBUvfcXESfGBKng9zAu8M6OsKZBeSVyRY,,N,,Y,Y,,F,I,"Improve label to DataONE data management platform, change access URL to https://search.dataone.org/data",I,http://purl.org/np/RAKk8fx2D_JUEYhovoh5Jqz4-YAAq-qh81Ig14vtWFylk,,
+454,Anjana Elapavalore,0000-0002-0295-6618,EuBIC-MS | EuBIC-MS (European Bioinformatics Community for Mass Spectrometry),http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw#EuBIC-MS,http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw,,Y,,Y,Y,,F,A,Accept,,,,


"Definition ok" should be 0 (FIC supercommunity incorrect)
"FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID" should be Parul's ORCID
proposal should be "I" (improve)

mabablue · 2024-01-22T18:57:31Z

I am checking all points, and will reply soon to what needs to happen then

…

On Mon, Jan 22, 2024 at 6:31 PM anjuraj15 ***@***.***> wrote: @burgerga <https://github.com/burgerga> Thank you for the comments. I am trying to understand the workflow behind the FSR qualification and sorry if I messed it up. So just to see if I got it right.. I make the changes to the CSV and once I commit the changes should I create a new pull request? — Reply to this email directly, view it on GitHub <#460 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AH2WOHH75ROTCEIRW6LN7JTYP2O6VAVCNFSM6AAAAABCFPC4PCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSMBUGQ4DAMBUG4> . You are receiving this because you were mentioned.Message ID: ***@***.***>

-- *Barbara Magagna* *FAIR Development Coordinator* GO FAIR Foundation E-mail: ***@***.*** Mobile: +43 69910057602 Skype: barbara.magagna Web: www.gofair.foundation Address: Poortgebouw Noord Rijnsburgerweg 10 2333 AA Leiden The Netherlands

mabablue · 2024-01-22T19:21:08Z

@anjuraj15 You forget to assign me reviewer in the PR ;)

@rbramley I think it's because it's created from nanodash, and not the FIP wizard, the FIP wizard does not ask for maturity. @anjuraj15 This should also be fixed in the FSR_QC.csv

@burgerga thanks for spotting this difference, I will need to update the FIP Wizard but this is not the reason... see above

Additonally, this FIC lists sub:proteomics as super community, but I think this is an error (the creator likely made a search, but forgot to remove the search term). Does anyone know Parul's Github handle? Because it's easiest if she fixes this

@anjuraj15 I propose instead to disapprove the nanopub and edit as derived nanopub with the identifier of the subject. I would not wait for Parul (she knows we are improving anyway)

Updated the proposal and FSR creator in the FSR_QC.csv

updated upstream

burgerga · 2024-01-23T12:05:37Z

Hi @anjuraj15,

Please see Barbara's latest comment, it should now be disapproved, and edited as a derived nanopublication.
Additionally, merging changes from main failed (it should not have the <<<< lines

github-actions · 2024-01-23T12:06:49Z

Here are the changes in FSR_QC.csv:

		1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
-	1. issue number	1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
+		1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
+	454	Anjana Elapavalore	0000-0002-0295-6618	EuBIC-MS \| EuBIC-MS (European Bioinformatics Community for Mass Spectrometry)	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw#EuBIC-MS	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw		Y		N	Y		0000-0002-3096-1318	I	Improve the FIC without the mention of super community

burgerga · 2024-01-23T12:10:00Z

I removed the merge conflict for you, still needs the "1. issue number" back in column 1 header though, see https://github.com/gofair-foundation/fsr_qualification/pull/460/files#r1462111530 (there you can click the 3 dots on the right side of the screen, and choose "Edit file")

anjuraj15 · 2024-01-23T12:10:07Z

Hi @anjuraj15,

Please see Barbara's latest comment, it should now be disapproved, and edited as a derived nanopublication. Additionally, merging changes from main failed (it should not have the <<<< lines

Yes, it was strange; my command line showed no conflicts while pushing the commits. I will update the FSR now.

updated proposal

github-actions · 2024-01-23T12:14:41Z

Here are the changes in FSR_QC.csv:

	1. issue number	1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
+	454	Anjana Elapavalore	0000-0002-0295-6618	EuBIC-MS \| EuBIC-MS (European Bioinformatics Community for Mass Spectrometry)	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw#EuBIC-MS	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw		Y		N	Y		0000-0002-3096-1318	D	Improve the FIC without the mention of super community

anjuraj15 · 2024-01-23T12:15:32Z

@burgerga I updated the proposal and the first column header. Thank you!

burgerga

Yes, looks great!

we have done the check now and we are happy with what Anjana has done

github-actions · 2024-04-09T09:35:29Z

Here are the changes in FSR_QC.csv:

	1. issue number	1. Person name	1. ORCID	1. FSR long name	1. FSR thing	1. FSR np identifier	1. URI of duplicate(s) (multiple separated by ';')	1. Links correct	1. Proposed Links	1. Definition ok	1. FSR types ok	1. FAIRSharing DOI to be added	1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID	1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	1. Proposed changes:	2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D)	2. URI of updated FSR	2. if FSR is useless, check affected FIPs or SIPs (title)	2. Updated (U) /Deleted (D) entry in FIP/SIP
+	454	Anjana Elapavalore	0000-0002-0295-6618	EuBIC-MS \| EuBIC-MS (European Bioinformatics Community for Mass Spectrometry)	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw#EuBIC-MS	http://purl.org/np/RAM97cdpYSchgAbbj_lF70I7ecn7LeSycJ_glSqjR7Fxw		Y		N	Y		0000-0002-3096-1318	D	Improve the FIC without the mention of super community

Update FSR_QC.csv

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Update FSR_QC.CSV - issue 454 EuBIC-MS

rbramley previously requested changes Jan 22, 2024

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mabablue approved these changes Jan 22, 2024

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anjuraj15 added 2 commits January 23, 2024 12:47

Update FSR_QC.csv

5574e9d

Updated the proposal and FSR creator in the FSR_QC.csv

Update FSR_QC.csv

c4bdbee

updated upstream

Merge branch 'main' into issue_454_prov

bfd4afb

Update FSR_QC.csv

ab58e5e

updated proposal

burgerga approved these changes Jan 23, 2024

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mabablue approved these changes Jan 23, 2024

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Merge branch 'main' into issue_454_prov

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Update FSR_QC.csv #460

Update FSR_QC.csv #460

anjuraj15 commented Jan 22, 2024 •

edited by rbramley

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		@@ -1,4 +1,4 @@
		1. issue number,1. Person name,1. ORCID,1. FSR long name,1. FSR thing,1. FSR np identifier,1. URI of duplicate(s) (multiple separated by ';'),1. Links correct,1. Proposed Links,1. Definition ok,1. FSR types ok,1. FAIRSharing DOI to be added,1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID,1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D),1. Proposed changes:,2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D),2. URI of updated FSR,"2. if FSR is useless, check affected FIPs or SIPs (title)",2. Updated (U) /Deleted (D) entry in FIP/SIP
		,1. Person name,1. ORCID,1. FSR long name,1. FSR thing,1. FSR np identifier,1. URI of duplicate(s) (multiple separated by ';'),1. Links correct,1. Proposed Links,1. Definition ok,1. FSR types ok,1. FAIRSharing DOI to be added,1. FSR creator in pubinfo (yellow): FIP Wizard (F) or the ORCID,1. proposal: accept (A) / Improve (I) / Retract (R) / Disapprove (D),1. Proposed changes:,2. actual changes: accept (A) / Improve (I) / Retract (R) / Disapprove (D),2. URI of updated FSR,"2. if FSR is useless, check affected FIPs or SIPs (title)",2. Updated (U) /Deleted (D) entry in FIP/SIP

Update FSR_QC.csv #460

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Update FSR_QC.csv #460

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