changing no_silent_downcasting to mode.chained_assignment since it se…

…ems the downcasting flag is deprecated for python v3.8 pandas v2
griffithlab · Nov 5, 2024 · 625848f · 625848f
1 parent 12e4360
commit 625848f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/generate_reviews_files.py b/scripts/generate_reviews_files.py
@@ -115,7 +115,7 @@ def fill_variant_called_column(df, variants):
                  variants["ALT"].astype(str)
 
     common_variants = df.merge(variants[["ID", "VALIDATED"]], on="ID", how="left")
-    with pd.option_context("future.no_silent_downcasting", True):
+    with pd.option_context('mode.chained_assignment', None):
         df["Variant Called by CLE Pipeline"] = common_variants["VALIDATED"].fillna(False)
 
 def main():