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CLE variants should not be required #28

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evelyn-schmidt opened this issue Dec 12, 2024 · 0 comments
Open

CLE variants should not be required #28

evelyn-schmidt opened this issue Dec 12, 2024 · 0 comments

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@evelyn-schmidt
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parser.add_argument('-variants',

common_variants = df.merge(variants[["ID", "VALIDATED"]], on="ID", how="left")
with pd.option_context('mode.chained_assignment', None):

When running these scripts for a JLF case, I noticed that you the variants file is required, so we need to change that to False and add an if statement to check if the CLE variants need to be added to the final sheet.

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