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Issues list

Error with MHCflurry and NetMHCcons Predictions in pvactools
#1161 opened Nov 22, 2024 by seetarajpara
1
Adding Gene and Transcript Expression to VCF for pVACseq
#1159 opened Nov 20, 2024 by biounix
5
Error: No command specified
#1158 opened Nov 19, 2024 by Geneece
3
Help with MT-WT epitope match for inframe mutations
#1152 opened Sep 24, 2024 by KhacDuyNguyen0
1
4
ValueError: substring not found when running proteome similarity search with pvacseq bug report / hotfix PR
#1150 opened Sep 16, 2024 by lukaas33
1
2
MHC allele supported by the original prediction method, but not recognized by pvacseq
#1146 opened Sep 13, 2024 by luyh-xp
1
3
Allow passing candidates to be based on binding OR percentile cutoff.
#1142 opened Sep 9, 2024 by malachig
2
Plans for adding NetTCR-2.0?
#1141 opened Sep 7, 2024 by lukaas33
1
Update pVACview documentation (vignette) and pVACview Tutorials page to mention anchor weights and anchor distribution tables documentation
#1140 opened Sep 5, 2024 by susannasiebert 4.5.0
The .aggregated.metrics.json file is not always generated bug report / hotfix PR
#1138 opened Aug 28, 2024 by lukaas33
3
Add support for dog alleles for NetMHCpan
#1131 opened Aug 15, 2024 by susannasiebert
1
1
pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?
#1118 opened Jun 26, 2024 by yiolino
6
Potential improvements to the pVACview NeoFox module pVACview
#1098 opened Apr 30, 2024 by susannasiebert
4 of 13 tasks
Consider integration of MixMHCPred2
#1093 opened Apr 15, 2024 by malachig
3
Prefilter pVACseq and pVACsplice on a user-defined list of biotypes
#1090 opened Apr 9, 2024 by susannasiebert 5.0.0
1
3
Output a visual representation of the graph after all spacers have been tested pVACvector
#1089 opened Apr 5, 2024 by susannasiebert
Fix various pVACvector issues pVACvector
#1087 opened Apr 1, 2024 by susannasiebert 4.5.0
1
Ensure that elution and immunogenicity percentile data is included in pVACview %ile violin plot pVACview
#1086 opened Mar 25, 2024 by susannasiebert 4.5.0
1
QUESTION: How to integrate netchop results to aditionnally filter possible peptides
#1064 opened Feb 19, 2024 by PierreLaplante
Overview of possible new prediction algorithms and their installation/run requirements
#1056 opened Jan 26, 2024 by susannasiebert
Consider integration with ACE a tool for generation of ELISpot configurations (peptide-pool assignments)
#1051 opened Jan 16, 2024 by malachig
Investigate PRIME prediction algorithm
#1029 opened Sep 25, 2023 by jhundal
1
Investigate DeepHLApan prediction algorithm grant
#1016 opened Aug 9, 2023 by susannasiebert
Evaluate MHCRank for integration
#1007 opened Jul 24, 2023 by malachig 4.5.0
Add matched WT to pVACfuse predictions grant
#993 opened Jul 6, 2023 by susannasiebert 5.0.0
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