fix: Remove cuda from test_emb #61
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| on: | |
| push: | |
| branches: [master] | |
| tags: | |
| - v* | |
| pull_request: | |
| branches: [master, dev] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.9", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check commit type | |
| if: '!contains(github.ref, ''tags'')' | |
| id: check-type | |
| run: | | |
| COMMIT_MSG=$(git log --format=%B -n 1 ${{ github.event.after }}) | |
| COMMIT_TYPE=$(echo $COMMIT_MSG | cut -d' ' -f1 | tr -d ':') | |
| echo "Commit type is '$COMMIT_TYPE'" | |
| echo "type=$COMMIT_TYPE" >> "$GITHUB_OUTPUT" | |
| - name: Check if tests should be skipped | |
| if: '!contains(github.ref, ''tags'')' | |
| id: check-skip | |
| run: | | |
| COMMIT_TYPE=${{ steps.check-type.outputs.type }} | |
| SKIP_TYPES=("docs" "refactor" "style" "chore") | |
| if [[ " ${SKIP_TYPES[@]} " =~ " ${COMMIT_TYPE} " ]]; then | |
| echo "Skipping tests..." | |
| echo "skip=true" >> "$GITHUB_OUTPUT" | |
| else | |
| echo "Running tests..." | |
| echo "skip=false" >> "$GITHUB_OUTPUT" | |
| fi | |
| - name: Set up Python ${{ matrix.python-version }} | |
| if: steps.check-skip.outputs.skip != 'true' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Openslide global dependencies | |
| if: steps.check-skip.outputs.skip != 'true' | |
| run: | | |
| sudo apt update | |
| sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools | |
| - name: Print Version Information | |
| if: steps.check-skip.outputs.skip != 'true' | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Load cached venv if cache exists | |
| if: steps.check-skip.outputs.skip != 'true' | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install Poetry | |
| if: steps.check-skip.outputs.skip != 'true' | |
| uses: snok/install-poetry@v1 | |
| - name: Install dependencies if cache does not exist | |
| if: steps.check-skip.outputs.skip != 'true' && steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --extras "emb" | |
| - name: Tests | |
| if: steps.check-skip.outputs.skip != 'true' | |
| run: poetry run pytest | |
| deploy: | |
| needs: [build] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Install Openslide global dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools | |
| - name: Print Version Information | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Load cached venv if cache exists | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| - name: Install dependencies if cache does not exist | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --extras "emb" | |
| - name: Deploy doc | |
| run: poetry run mkdocs gh-deploy --force | |
| publish: | |
| needs: [build] | |
| if: contains(github.ref, 'tags') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build and publish to pypi | |
| uses: JRubics/[email protected] | |
| with: | |
| python_version: "3.10" | |
| pypi_token: ${{ secrets.PYPI_TOKEN }} |