Skip to content

Commit

Permalink
Added link to PyMol plugin to invert the AF coloring
Browse files Browse the repository at this point in the history
  • Loading branch information
amjjbonvin committed Nov 23, 2024
1 parent b35fa76 commit 1cec33d
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -744,8 +744,9 @@ Examine the various models. How does the orientation of the antigen differ betwe
spectrum b
</a>

**Note** that the scale in the B-factor field is the inverse of the color coding in the PAE plots: i.e. red mean reliable (high pLDDT) and blue unreliable (low pLDDT))
</details>
**Note** that the scale in the B-factor field is the inverse of the color coding in the PAE plots:
i.e. red mean reliable (high pLDDT) and blue unreliable (low pLDDT)). If you want to have the inverse coloring
you can use a PyMol plugin, e.g. as described [here](https://github.com/cbalbin-bio/pymol-color-alphafold){:target="\_blank"}</details>
<br>

Since we do have NMR chemical shift perturbation data for the antigen, let's check if the perturbed residues are at the interface in the AF2 models.
Expand Down

0 comments on commit 1cec33d

Please sign in to comment.