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@halbritter-lab

Halbritter Lab

Nephrology, internal medicine, intensive care medicine, and rare kidney diseases.
README.md

Welcome to Halbritter Lab's GitHub Repository

About us 🌐

Welcome to the Halbritter Lab, an research group led by Prof. Dr. med. Jan Halbritter. Our laboratory is part of the Charité - Universitätsmedizin Berlin, a renowned medical institution in Germany. The Halbritter Lab specializes in nephrology, internal medicine, and intensive care medicine, with a particular emphasis on rare kidney diseases.

Contact us 📬

For more information about our research or to discuss potential collaborations, please contact Prof. Dr. med. Jan Halbritter at:

  • 📧 jan.halbritter[at]charite.de

Contributing to Our Repository 🤝

We welcome contributions from researchers and practitioners in the field of nephrology and related disciplines. If you are interested in contributing to our projects, please read our contribution guidelines. Thank you for visiting the Halbritter Lab's GitHub repository. We look forward to collaborating with you in advancing nephrology research.

Disclaimer: Any opinions expressed here are solely my own and do not reflect the views of my employer, funders, or their affiliates.

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  1. kidney-genetics kidney-genetics Public

    Kidney-Genetics - database of kidney-related genes

    HTML 2

  2. pld-progression-grouper pld-progression-grouper Public

    PLD-Progression Grouper - visualize and analyze the progression of Polycystic Liver Disease (PLD) through user-inputted clinical data

    Vue 1

  3. nephro_candidate_score nephro_candidate_score Public

    a tool for automatic priorization of variants in kidney disease patients

    Python

Repositories

Showing 9 of 9 repositories
  • Amissense Public

    The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.

    halbritter-lab/Amissense’s past year of commit activity
    Python 0 MIT 0 28 0 Updated Oct 6, 2024
  • adpkd-risk Public

    A Vue.js app for calculating and visualizing Mayo and PROPKD scores to assess risk in ADPKD patients. Built with Vuetify, Chart.js, and Vite for interactive data visualization.

    halbritter-lab/adpkd-risk’s past year of commit activity
    Vue 0 MIT 0 14 0 Updated Sep 18, 2024
  • alpha-missense-scores Public

    Alpha Missense Scores provides precomputed JSON files with AlphaMissense pathogenicity scores for protein variants. Derived from DeepMind's TSV dataset, these JSON files are can be accessed via HTTP queries. This repository allows efficient data retrieval, bypassing the need for local processing of the original TSV files.

    halbritter-lab/alpha-missense-scores’s past year of commit activity
    0 0 1 0 Updated Aug 22, 2024
  • nephro_candidate_score Public

    a tool for automatic priorization of variants in kidney disease patients

    halbritter-lab/nephro_candidate_score’s past year of commit activity
    Python 0 0 3 0 Updated Jun 11, 2024
  • kidney-genetics Public

    Kidney-Genetics - database of kidney-related genes

    halbritter-lab/kidney-genetics’s past year of commit activity
    HTML 2 MIT 0 26 0 Updated May 31, 2024
  • gene-curator Public

    Gene Curator is an open-source platform for managing and curating genetic data. It facilitates gene data analysis, entry, and reporting, serving genetics researchers with tools for efficient data handling.

    halbritter-lab/gene-curator’s past year of commit activity
    Vue 5 MIT 1 56 (1 issue needs help) 0 Updated Apr 11, 2024
  • nc-scorer Public

    NC-Scorer is a tool designed to standardize and automate the assessment of candidate gene variants identified through genetic sequencing for Chronic Kidney Disease (CKDu) research. Utilizing the Nephro Candidate Score (NCS), it accelerates the discovery of genetic associations in CKD.

    halbritter-lab/nc-scorer’s past year of commit activity
    Vue 0 MIT 0 10 0 Updated Apr 10, 2024
  • pld-progression-grouper Public

    PLD-Progression Grouper - visualize and analyze the progression of Polycystic Liver Disease (PLD) through user-inputted clinical data

    halbritter-lab/pld-progression-grouper’s past year of commit activity
    Vue 0 MIT 1 5 0 Updated Dec 13, 2023
  • .github Public
    halbritter-lab/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 5, 2023

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