TF predictions

Models

Scbasset modified

TFBanformer

Analysis

Region and TF representation

In silico mutagenesis

For the deepexplainer, you will need to modify one line in order to be able to to choose which TF the analyse

Go to shap/explainers/_deep/deep_pytorch.py

elif output_rank_order.isnumeric():
    _, model_output_ranks = torch.sort(model_output_values, descending=True)
    model_output_ranks[0] = int(output_rank_order)