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Collection of standard analytical pipelines for genomic and transcriptomic data

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lcr-modules: Standardizing genomic analyses

This project aims to become a collection of standard analytical modules for genomic and transcriptomic data. Too often do we copy-paste from each other’s pipelines, which has several pitfalls. Fortunately, all of these problems can be solved with standardized analytical modules, and the benefits are many.

Documentation: https://lcr-modules.readthedocs.io/

License: LICENSE

Installing oncopipe

pip install oncopipe

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Collection of standard analytical pipelines for genomic and transcriptomic data

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  • Python 89.0%
  • R 7.4%
  • Perl 2.7%
  • Shell 0.9%