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Updated READMEs and added hed-standard/owl
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| # Hierarchical Event Descriptor Ontology | ||
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| # Hierarchical Event Descriptors | ||
| HED (Hierarchical Event Descriptors) is a standardized vocabulary and supporting infrastructure for | ||
| annotating experimental metadata and mapping it into the experimental timeline. | ||
| See [**HED resources**](https://www.hed-resources.org/en/latest/index.html) for more information about the | ||
| HED project. | ||
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| Description: None | ||
| ## HED schemas and the HED ontology | ||
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| More information can be found at http://obofoundry.org/ontology/hed | ||
| HED itself consists of a standard vocabulary the (HED standard schema) and specialized | ||
| subfield vocabularies (HED library schemas). | ||
| These vocabularies are developed and maintained in the | ||
| [**hed-schemas**](https://github.com/hed-standard/hed-schamas) GitHub repository. | ||
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| ## Versions | ||
| The HED ontology is a representation of the HED schemas as a formal ontology of the HED information space. | ||
| Releases of new HED schemas trigger a generation of a new HED ontology | ||
| in this repository ([**hed-ontology**](https://github.com/hed-standard/hed-ontology)), | ||
| and maintainers of this repository do a new release. | ||
| The correspondence between the HED schemas and HED ontology is explained more fully in | ||
| [**The HED ontology**](https://hed-specification.readthedocs.io/en/latest/08_HED_ontology.html) | ||
| chapter of the [**hed-specification](https://githum.com/hed-standard/hed-specification). | ||
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| ### Stable release versions | ||
| ## HED namespaces and IRIs | ||
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| The latest version of the ontology can always be found at: | ||
| Each HED entity in the HED information space has a globally unique identifier | ||
| of the form `HED_xxxxxxx` where `xxxxxxxx` is a 7-digit number. | ||
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| http://purl.obolibrary.org/obo/hed.owl | ||
| The identifier namespace is assigned as follows: | ||
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| (note this will not show up until the request has been approved by obofoundry.org) | ||
| | Schema | ID Range | Description | | ||
| |-------------------------|--------------------|--------------------------------------| | ||
| | Structure | 0000001 - 0009999 | Structure elements for HED ontology. | | ||
| | Standard | 0010001 - 0039999 | Standard annotation of experiments. | | ||
| | Score | 0042000- 0059999 | Annotation by clinical neurologists. | | ||
| | Lang | 0062000 - 0079999 | Annotation of language stimuli. | | ||
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| ### Editors' version | ||
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| Editors of this ontology should use the edit version, [src/ontology/hed-edit.owl](src/ontology/scratch/hed-edit.owl) | ||
| ## Ontology versions | ||
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| ## Contact | ||
| | Version | Contains | Files | Description | | ||
| | ------- | --------|----------------------------------------------------------------|-----------------------------------| | ||
| | 2024-10-06 | 8.3.0 | `hed.owl`<br/>`hed-standard.owl` | Contains only the standard schema | | ||
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| Please use this GitHub repository's [Issue tracker](https://github.com/hed-standard/hed-ontology-test/issues) to request new terms/classes or report errors or specific concerns related to the ontology. | ||
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| ## Acknowledgements | ||
| ### PURLS | ||
| These are the PURL values relative to the | ||
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| This ontology repository was created using the [Ontology Development Kit (ODK)](https://github.com/INCATools/ontology-development-kit). | ||
| | PURL | Relative path | | ||
| | ---- |----------------------------------------| | ||
| | [https://purl.org/hed/hed.owl](https://purl.org/hed/hed.owl) | `./hed.owl` | | ||
| | [https://purl.org/hed/hed-standard.owl](https://purl.org/hed/hed-standard.owl) | `./hed-standard.owl` | | ||
| | [https://purl.org/hed/releases/2024-10-06/hed.owl](https://purl.org/hed/releases/2024-10-06/hed.owl) | `./releases/2024-10-06/hed.owl` | | ||
| | [https://purl.org/hed/releases/2024-10-06/hed.owl](https://purl.org/hed/releases/2024-10-06/hed-standard.owl) | `./releases/2024-10-06/hed-standard.owl` | | ||
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| Requesting a new term or suggesting an edit of existing terms | ||
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| We welcome your contribution to the ontology. If you notice a term is missing or would like to suggest any update (definition, name, synonym, position) of an existing term, please open a new issue following the steps below to submit your request. | ||
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| 1. Go to the **Issues** tab | ||
| 2. Open a **New issue** | ||
| 3. Fill the issue with the following information: | ||
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| | | Mandatory information | Optional information | | ||
| | ------------- | ------------- | ------------- | | ||
| | Requesting a new term | <ul><li>Title: Start by **NTR** followed by your term (i.e. NTR:Tillage)</li><li>Definition of the new term</li><li>Link to the definition source</li></ul> |<ul><li>Position of the term in the ontology</li><li>Link to other terms</li><li>Possible synonyms for the new term</li><li>Your ORCID, so we can cite you as the creator of the term</li>| | ||
| |Updating the definition of an existing term | <ul><li>Title: Start by **Edit def** followed by the term to edit (i.e. Edit def:Irrigation)</li><li>URI of the existing term</li><li> New definition</li><li>Link to the new definition source</li></ul> |<ul><li>Your ORCID, so we can cite you as contributor to the term</li>| | ||
| |Adding a synonym | <ul><li>Title: Start by **Synonym** followed by the existing term to add the synonym to (i.e. Synonym:Baler)</li><li>URI of the existing term</li><li> Synonym to add</li></ul> |<ul><li>Link to sources supporting your edit</li><li>Your ORCID, so we can cite you as contributor to the term</li>| | ||
| |Other edits of an existing term | <ul><li>Title: Start by **Edit** followed by the term to edit (i.e. Edit:Irrigation)</li><li>URI of the existing term</li><li>Precise the edit you would like to make</li></ul> |<ul><li>Link to sources supporting your edit</li><li>Your ORCID, so we can cite you as the creator of the term</li>| | ||
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| 5. Click on **Submit new issue** to validate your entry. We will get back to you soon! | ||
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| # Contact | ||
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| In general, posts to our GitHub issue tracker are recommended, however, if needed, you can contact the ontology curator by sending an e-mail [here](mailto:[email protected]). | ||
| In general, posts to our GitHub issue tracker are recommended, however, | ||
| if needed, you can contact the ontology curator by sending an e-mail | ||
| [mailto:[email protected]](mailto:[email protected]). | ||
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| # License | ||
| <a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png" /></a><br /><span xmlns:dct="http://purl.org/dc/terms/" property="dct:title">Agronomy Ontology</span> by <span xmlns:cc="http://creativecommons.org/ns#" property="cc:attributionName">https://github.com/AgriculturalSemantics/agro</span> is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>. | ||
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| # Cite as |
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