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hiranumn authored Jan 1, 2021
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Expand Up @@ -44,13 +44,19 @@ v0.0.1
- [ProtTrans](https://github.com/agemagician/ProtTrans) and the ProtBert model (second one in the model availability table) for DeepAccNet-Bert.
- Tested on Ubuntu 20.04 LTS

(For IPD users, please use the ```tensorflow``` conda environment)

# Example usages

Running on a folder of pdbs (foldername: ```samples```)
```
python DeepAccNet.py -r -v samples outputs
```
(For IPD users, please use the ```tensorflow``` conda environment)

Running on a silentfile (filename: ```sample.silent```)
```
python DeepAccNet-SILENT.py sample.silent output.csv
```

# How to look at outputs
Output of the network is written to ```[input_file_name].npz```, unless you had the ```--csv``` flag on.
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