Add loging

hms-dbmi · Mar 1, 2024 · c0a9445 · c0a9445
1 parent 3ef57d0
commit c0a9445
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/etl/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/etl/genotype/GenomicDatasetMerger.java b/etl/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/etl/genotype/GenomicDatasetMerger.java
@@ -226,6 +226,7 @@ public FileBackedJsonIndexStorage<Integer, ConcurrentHashMap<String, VariableVar
             Map<String, VariableVariantMasks> masks1 = variantMaskStorage1.get(key);
             Map<String, VariableVariantMasks> masks2 = variantMaskStorage2.get(key);
             if (masks2 == null) {
+                log.info("Key " + key + " not found in dataset 2");
                 masks2 = Map.of();
             }
 
@@ -251,6 +252,7 @@ public FileBackedJsonIndexStorage<Integer, ConcurrentHashMap<String, VariableVar
 
         variantMaskStorage2.keys().forEach(key -> {
             if (variantMaskStorage1.get(key) == null) {
+                log.info("Key " + key + " not found in dataset 1");
                 ConcurrentHashMap<String, VariableVariantMasks> mergedMasks = new ConcurrentHashMap<>();
                 Map<String, VariableVariantMasks> masks2 = variantMaskStorage2.get(key);
                 for (Map.Entry<String, VariableVariantMasks> entry : masks2.entrySet()) {