Use new CSV loader in test environment

Replace `CSVLoader` with `CSVLoaderNewSearch` in test setup.
hms-dbmi · Mar 3, 2025 · c338877 · c338877
1 parent ded1c3c
commit c338877
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/...st/java/edu/harvard/hms/dbmi/avillach/hpds/test/util/BuildIntegrationTestEnvironment.java b/...st/java/edu/harvard/hms/dbmi/avillach/hpds/test/util/BuildIntegrationTestEnvironment.java
@@ -5,6 +5,7 @@
 import edu.harvard.hms.dbmi.avillach.hpds.etl.genotype.NewVCFLoader;
 import edu.harvard.hms.dbmi.avillach.hpds.etl.genotype.VariantMetadataLoader;
 import edu.harvard.hms.dbmi.avillach.hpds.etl.phenotype.csv.CSVLoader;
+import edu.harvard.hms.dbmi.avillach.hpds.etl.phenotype.csv.CSVLoaderNewSearch;
 
 import java.io.IOException;
 
@@ -21,7 +22,7 @@ public enum BuildIntegrationTestEnvironment {
     BuildIntegrationTestEnvironment() {
         try {
             NewVCFLoader.main(new String[] {VCF_INDEX_FILE, STORAGE_DIR, MERGED_DIR});
-            CSVLoader.main(new String[] {PHENOTYPIC_DATA_DIRECTORY});
+            CSVLoaderNewSearch.main(new String[] {PHENOTYPIC_DATA_DIRECTORY}); // this is not the current CSVLoader for current version of the application
             VariantMetadataLoader.main(new String[] {"./src/test/resources/test_vcfIndex.tsv", binFile, "target/VariantMetadataStorage.bin"});
             VariantStore variantStore = VariantStore.readInstance(STORAGE_DIR);
             BucketIndexBySample bucketIndexBySample = new BucketIndexBySample(variantStore, STORAGE_DIR);