Apply suggestions from code review #1083
Workflow file for this run
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| name: Checks | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: [push, pull_request] | |
| jobs: | |
| check-doc: | |
| name: Doc consistency and codespell | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - run: pip install --upgrade pip | |
| - run: pip install -ve .[tests] codespell tomli | |
| - run: make codespell-error | |
| - run: pytest mne_bids_pipeline -m "not dataset_test" | |
| - uses: codecov/codecov-action@v4 | |
| if: success() | |
| name: 'Upload coverage to CodeCov' | |
| caching: | |
| name: 'Caching on ${{ matrix.os }}' | |
| timeout-minutes: 30 | |
| continue-on-error: true | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| - os: macos-latest | |
| - os: windows-latest | |
| env: | |
| MNE_BIDS_PIPELINE_LEGACY_WINDOWS: "false" | |
| PYTHONIOENCODING: 'utf8' # for Windows | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| pyvista: false | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" # no "multidict" wheels on 3.12 yet | |
| - run: pip install -ve .[tests] | |
| - uses: actions/cache@v4 | |
| with: | |
| key: ds001971 | |
| path: ~/mne_data/ds001971 | |
| id: ds001971-cache | |
| - run: python -m mne_bids_pipeline._download ds001971 | |
| if: steps.ds001971-cache.outputs.cache-hit != 'true' | |
| - run: pytest --cov-append -k ds001971 mne_bids_pipeline/ | |
| - run: pytest --cov-append -k ds001971 mne_bids_pipeline/ # uses "hash" method | |
| timeout-minutes: 1 | |
| - uses: actions/cache@v4 | |
| with: | |
| key: ds003392 | |
| path: ~/mne_data/ds003392 | |
| id: ds003392-cache | |
| - run: python -m mne_bids_pipeline._download ds003392 | |
| if: steps.ds003392-cache.outputs.cache-hit != 'true' | |
| - run: pytest --cov-append -k ds003392 mne_bids_pipeline/ | |
| - run: pytest --cov-append -k ds003392 mne_bids_pipeline/ # uses "mtime" method | |
| timeout-minutes: 1 | |
| - uses: codecov/codecov-action@v4 | |
| if: success() |