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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 181 repositories
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 3 86 9 Updated May 5, 2025
  • portal-visualization Public

    Given HuBMAP Dataset JSON, creates a Vitessce configuration

    hubmapconsortium/portal-visualization’s past year of commit activity
    Python 1 MIT 1 11 5 Updated May 5, 2025
  • hra-registrations Public

    Manually curated HRA Dataset Graphs

    hubmapconsortium/hra-registrations’s past year of commit activity
    HTML 1 MIT 0 14 0 Updated May 5, 2025
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 13 MIT 2 200 31 Updated May 5, 2025
  • documentation Public

    General Documentation For HuBMAP

    hubmapconsortium/documentation’s past year of commit activity
    JavaScript 0 1 5 0 Updated May 5, 2025
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 41 8 Updated May 5, 2025
  • ingest-validation-tests Public
    hubmapconsortium/ingest-validation-tests’s past year of commit activity
    Python 0 0 4 1 Updated May 5, 2025
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui’s past year of commit activity
    JavaScript 4 MIT 0 95 (1 issue needs help) 2 Updated May 5, 2025
  • portal-containers Public

    Docker containers to pre-process data for visualization in the portal

    hubmapconsortium/portal-containers’s past year of commit activity
    Python 0 MIT 1 22 (1 issue needs help) 28 Updated May 5, 2025
  • entity-api Public

    A set of web service calls to return information about HuBMAP entities

    hubmapconsortium/entity-api’s past year of commit activity
    Python 3 MIT 1 47 3 Updated May 5, 2025
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