Adding annotation to the convolution windows #58
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Hi,
I often need to look up what window
i
in CNV space (adata.obsm['X_cnv'][:,i]
) corresponds to in gene space (i.e. which chromosome, which genes, which coordinates). Might relate to #50Hence I added this information in adata.uns['cnv']['var']. Its pretty much the equivalent of .var in the epxression AnnData, just for the CNV-space.
For example, to get all windows from chromosome one, you'd do