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Update lock #58

Workflow file for this run

name: pytest
on: [push, pull_request]
jobs:
cache_test_images:
name: cache test images
runs-on: ubuntu-latest
steps:
- name: Prevent cache-miss on windows
run: |
git config --global core.autocrlf false
git config --global core.eol lf
- name: Checkout repository
uses: actions/checkout@v4
- name: Load test images from cache
id: cache-test-images
uses: actions/cache@v4
with:
key: test-images-cache-${{ hashFiles('tests/download_test_images.py') }}
path: tests/testdata/slides
enableCrossOsArchive: true
- name: Download test images
if: ${{ steps.cache-test-images.outputs.cache-hit != 'true' }}
run: |
python -m pip install -U pip
python -m pip install requests
python tests/download_test_images.py
tests:
needs: [cache_test_images]
name: pytest ${{ matrix.os }}::py${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 6
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version: ["3.10", "3.11", "3.12"]
steps:
- name: Prevent cache-miss on windows
run: |
git config --global core.autocrlf false
git config --global core.eol lf
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Python
id: setup-python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Use GNU tar instead BSD tar
if: matrix.os == 'windows-latest'
shell: cmd
run: echo C:\Program Files\Git\usr\bin>>"%GITHUB_PATH%"
- name: Load test images from cache
id: cache-test-images
uses: actions/cache@v4
with:
key: test-images-cache-${{ hashFiles('tests/download_test_images.py') }}
path: tests/testdata/slides
enableCrossOsArchive: true
fail-on-cache-miss: true
- name: Set up Ubuntu
if: matrix.os == 'ubuntu-latest'
run: sudo apt-get install -y libturbojpeg libopenslide0
- name: Set up OSX
if: matrix.os == 'macos-latest'
run: |
echo OS_TAG=macos >> $GITHUB_ENV
echo DYLD_LIBRARY_PATH=/opt/homebrew/lib >> $GITHUB_ENV
brew install openslide
brew unlink jpeg-turbo && brew install jpeg-turbo --HEAD
- name: Set up Windows
shell: pwsh
if: matrix.os == 'windows-latest'
run: |
Invoke-WebRequest -Uri https://github.com/libjpeg-turbo/libjpeg-turbo/releases/download/3.0.90/libjpeg-turbo-3.0.90-vc64.exe -OutFile libjpeg-turbo-3.0.90-vc64.exe -UserAgent "NativeHost"
7z e libjpeg-turbo-3.0.90-vc64.exe -oC:\turbojpeg bin/turbojpeg.dll
Invoke-WebRequest -Uri https://github.com/openslide/openslide-winbuild/releases/download/v20221217/openslide-win64-20221217.zip -OutFile openslide-win64-20221217.zip -UserAgent "NativeHost"
7z e openslide-win64-20221217.zip -oC:\openslide openslide-win64-20221217\bin
- name: Set up paths in windows
if: matrix.os == 'windows-latest'
uses: actions/github-script@v7
with:
script: |
core.addPath('C:\\openslide')
core.addPath('C:\\turbojpeg')
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install poetry
- name: Install Application
run: python -m poetry install --all-extras
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
python -m poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
python -m poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=80 --statistics
- name: Run tests
env:
TURBOJPEG: C:\turbojpeg
run: python -m poetry run pytest