DOC: Fix various documentation bugs. (BlueQuartzSoftware#973)

Signed-off-by: Michael Jackson <[email protected]>

src/Plugins/ITKImageProcessing/src/ITKImageProcessing/Filters/ITKLabelContourImageFilter.cpp

@@ -75,7 +75,7 @@ Parameters ITKLabelContourImageFilter::parameters() const
   params.insertSeparator(Parameters::Separator{"Input Parameter(s)"});
   params.insert(std::make_unique<BoolParameter>(k_FullyConnected_Key, "Fully Connected",
                                                 "Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. "
-                                                "\note For objects that are 1 pixel wide, use FullyConnectedOn.",
+                                                "Note For objects that are 1 pixel wide, use FullyConnectedOn.",
                                                 false));
   params.insert(std::make_unique<Float64Parameter>(k_BackgroundValue_Key, "Background Value",
                                                    "Set/Get the background value used to identify the objects and mark the pixels not on the border of the objects.", 0));

src/Plugins/OrientationAnalysis/docs/ReadH5EspritDataFilter.md

@@ -28,7 +28,7 @@ If the data has come from a TSL acquisition system and the settings of the acqui
 + Sample Reference Frame: 180<sup>o</sup> about the <010> Axis
 + Crystal Reference Frame: 90<sup>o</sup> about the <001> Axis
 
-The user also may want to assign un-indexed pixels to be ignored by flagging them as "bad". The {ref}`Threshold Objects <SimplnxCore/MultiThresholdObjects:Description>` Filter can be used to define this *mask* by thresholding on values such as *MAD* > xx.
+The user also may want to assign un-indexed pixels to be ignored by flagging them as "bad". The {ref}`Threshold Objects <SimplnxCore/MultiThresholdObjectsFilter:Description>` Filter can be used to define this *mask* by thresholding on values such as *MAD* > xx.
 
 + Note: If the X Step or Y Step within the HDF5 file for a scan is ZERO, those values will be set to 1.0 when the filter runs. This is needed
 as the user has no effective way to fix the HDF5 file. If the user needs a different

src/Plugins/OrientationAnalysis/docs/ReadH5OimDataFilter.md

@@ -31,7 +31,7 @@ the user should **CHECK** the option **ON** for "Perform Slice By Slice Transfor
 
 ## Thresholding out Unindexed Scan Points
 
-The user also may want to assign un-indexed pixels to be ignored by flagging them as "bad". The {ref}`Threshold Objects <SimplnxCore/MultiThresholdObjects:Description>` **Filter** can be used to define this *mask* by thresholding on values such as *Confidence Index* > xx or *Image Quality* > desired quality.
+The user also may want to assign un-indexed pixels to be ignored by flagging them as "bad". The {ref}`Threshold Objects <SimplnxCore/MultiThresholdObjectsFilter:Description>` **Filter** can be used to define this *mask* by thresholding on values such as *Confidence Index* > xx or *Image Quality* > desired quality.
 
 % Auto generated parameter table will be inserted here
 

src/Plugins/OrientationAnalysis/docs/ReadH5OinaDataFilter.md

@@ -23,8 +23,8 @@ needs additional data from the file, the "Import HDF5 Dataset" filter can be use
 
 In order to bring the crystal reference frame and sample reference frame into coincidence, rotations **MAY** need to be applied to the data. There are 2 filters that can perform the necessary rotations.
 
-+ [Rotate Euler Reference Frame](../RotateEulerRefFrameFilter/index.html)
-+ [Rotate Sample Reference Frame](../RotateSampleRefFrameFilter/index.html)
+- {ref}`Rotate Euler Reference Frame <OrientationAnalysis/RotateEulerRefFrameFilter:Description>`
+- {ref}`Rotate Sample Reference Frame <SimplnxCore/RotateSampleRefFrameFilter:Description>`
 
 Historical reference frame operations for a .ctf file are the following:
 

wrapping/python/docs/source/Developer_API.rst

@@ -112,7 +112,7 @@ General Parameters
    ~~~~~~~~~~~
    The ``ArrayThresholdsParameter`` is used to specify thresholds for an array, allowing for filtering based on those thresholds.
 
-   This parameter holds a ArrayThresholdSet_ object and is used specifically for the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjects>` filter.
+   This parameter holds a ArrayThresholdSet_ object and is used specifically for the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjectsFilter>` filter.
    This parameter should not be directly invoked but instead its ArrayThresholdSet_ is invoked and used.
 
    Inputs
@@ -188,7 +188,7 @@ General Parameters
 .. _ArrayThreshold:
 .. py:class:: ArrayThresholdSet.ArrayThreshold
 
-  This class holds the values that are used for comparison in the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjects>` filter.
+  This class holds the values that are used for comparison in the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjectsFilter>` filter.
 
   :ivar array_path: The :ref:`DataPath <DataPath>` to the array to use for this ArrayThreshold
   :ivar comparison: Int. The comparison operator to use. 0=">", 1="<", 2="=", 3="!="

wrapping/python/docs/source/User_API.rst

@@ -56,7 +56,7 @@ General Parameters
 .. _ArrayThresholdsParameter:
 .. py:class:: ArrayThresholdsParameter
 
-   This parameter holds a ArrayThresholdSet_ object and is used specifically for the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjects>` filter.
+   This parameter holds a ArrayThresholdSet_ object and is used specifically for the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjectsFilter>` filter.
    This parameter should not be directly invoked but instead it's ArrayThresholdSet_ is invoked and used.
 
 
@@ -70,7 +70,7 @@ General Parameters
 .. _ArrayThreshold:
 .. py:class:: ArrayThresholdSet.ArrayThreshold
 
-  This class holds the values that are used for comparison in the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjects>` filter.
+  This class holds the values that are used for comparison in the :ref:`simplnx.MultiThresholdObjects() <MultiThresholdObjectsFilter>` filter.
 
   :ivar array_path: The :ref:`DataPath <DataPath>` to the array to use for this ArrayThreshold
   :ivar comparison: Int. The comparison operator to use. 0=">", 1="<", 2="=", 3="!="