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Merge remote-tracking branch 'origin/master' into add-viv-viewer
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oeway committed Jun 17, 2020
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21 changes: 19 additions & 2 deletions README.md
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<a href="https://kaibu.org" target="_blank" ><img src="https://raw.githubusercontent.com/imjoy-team/kaibu/master/public/static/img/kaibu-banner.svg?sanitize=true" width="380" alt="Kaibu"></img>
</a>

[![Launch ImJoy](https://imjoy.io/static/badge/launch-imjoy-badge.svg)](https://imjoy.io/#/app?plugin=https://kaibu.org/#/app)
[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gist/oeway/690c2e62311223ae93e644d542eb8949/master?filepath=Kaibu-jupyter-tutorial.ipynb)


Kaibu is a web application for visualizing and annotating multi-dimensional images, built with [OpenLayers](https://openlayers.org/) and [itk-vtk-viewer](https://kitware.github.io/itk-vtk-viewer/).

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Currently we support `view_image`, `add_shapes` and `add_points`, the definition is mostly the same as [napari](https://napari.org/).

You can also try the above code in a Jupyter notebook on binder, [click here](https://mybinder.org/v2/gh/imjoy-team/imjoy-binder-image/master?filepath=imjoy-jupyter-tutorial.ipynb) to launch a notebook on Binder (may take a while to start).
You can also try the above code in a Jupyter notebook on binder, [click here](https://mybinder.org/v2/gist/oeway/690c2e62311223ae93e644d542eb8949/master?filepath=Kaibu-jupyter-tutorial.ipynb) to launch a notebook on Binder (may take a while to start).

### In a Jupyter notebook
Run `pip install imjoy-jupyter-extension`, then start the the Jupyter notebook. Then you can use the above plugin example in the notebook.

You can also try the demo here: [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/oeway/690c2e62311223ae93e644d542eb8949/master?filepath=Kaibu-jupyter-example.ipynb)
You can try the demo on Binder here: [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gist/oeway/690c2e62311223ae93e644d542eb8949/master?filepath=Kaibu-jupyter-tutorial.ipynb)

### Kaibu badges
We provide two badges for you to add to your project:

![open with kaibu](https://kaibu.org/static/badge/open-with-kaibu.svg)

![view in kaibu](https://kaibu.org/static/badge/view-in-kaibu.svg)

```
![open with kaibu](https://kaibu.org/static/badge/open-with-kaibu.svg)
![view in kaibu](https://kaibu.org/static/badge/view-in-kaibu.svg)
```

## Why Kaibu?

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