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udated draft_seeds, gff and tree
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@l-singh-biomsu
l-singh-biomsu committed Oct 30, 2024
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130 changes: 9 additions & 121 deletions CURATED_SET/curated_service/curatedDB/generate_draft_seeds.ipynb
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Expand Up @@ -164,7 +164,7 @@
},
{
"cell_type": "code",
"execution_count": 52,
"execution_count": 61,
"id": "650ed4b1-60d9-456d-977d-125949071539",
"metadata": {
"tags": []
Expand All @@ -177,7 +177,7 @@
" SeqRecord(\n",
" Seq(row[\"sequence\"]),\n",
" # id=f\"{row['organism'].split()[0]}|{row['accession']}|{row['variant']}\",\n",
" id=f\"{row['variant']}_{row['organism'].replace(' ', '_')}_{row['accession']}\",\n",
" id=f\"{row['variant'].replace('(', '').replace(')', '')}_{row['organism'].replace(' ', '_')}_{row['accession']}\",\n",
" name=row[\"accession\"],\n",
" description=f\"organism={row['organism']} phylum={row['phylum']} class={row['class']}\",\n",
" ).format(\"fasta\")\n",
Expand Down Expand Up @@ -893,7 +893,7 @@
},
{
"cell_type": "code",
"execution_count": 55,
"execution_count": 62,
"id": "b09590fc-4dd0-44d2-9c99-e87ad5ff1660",
"metadata": {
"collapsed": true,
Expand Down Expand Up @@ -1671,7 +1671,7 @@
},
{
"cell_type": "code",
"execution_count": 56,
"execution_count": 63,
"id": "889b517f-cf89-460f-8ccc-da0c2ec1e001",
"metadata": {
"collapsed": true,
Expand Down Expand Up @@ -1914,7 +1914,7 @@
},
{
"cell_type": "code",
"execution_count": 57,
"execution_count": 64,
"id": "57cbb132-2ce4-46e2-b213-f045d5e01d90",
"metadata": {
"tags": []
Expand All @@ -1926,7 +1926,7 @@
},
{
"cell_type": "code",
"execution_count": 58,
"execution_count": 65,
"id": "308d3930-5c07-4367-9a57-358fb30b713c",
"metadata": {
"tags": []
Expand All @@ -1938,7 +1938,7 @@
},
{
"cell_type": "code",
"execution_count": 59,
"execution_count": 66,
"id": "667e6544-087f-47ed-9251-0f5f559e3a06",
"metadata": {
"tags": []
Expand Down Expand Up @@ -1969,13 +1969,9 @@
},
{
"cell_type": "code",
"execution_count": 60,
"execution_count": null,
"id": "08671eff-0312-4d18-86f9-495df45db45f",
"metadata": {
"collapsed": true,
"jupyter": {
"outputs_hidden": true
},
"tags": []
},
"outputs": [
Expand All @@ -1999,52 +1995,37 @@
"Building H1.5_(Homo_sapiens)\n",
"Building H1.5\n",
"Building H1.8_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building OO_H1.8\n",
"Ошибка выполнения скрипта: \n",
"Building scH1\n",
"Building H1.6_(Homo_sapiens)\n",
"Building TS_H1.6\n",
"Building H1.7_(Homo_sapiens)\n",
"Building TS_H1.7\n",
"Building TS_H1.9\n",
"Building H1\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A.10_(Homo_sapiens)\n",
"Building cH2A.11_(Homo_sapiens)\n",
"Building cH2A.1_(Homo_sapiens)\n",
"Building cH2A.2_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A.3_(Homo_sapiens)\n",
"Building cH2A.4_(Homo_sapiens)\n",
"Building cH2A.5_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A.6_(Homo_sapiens)\n",
"Building cH2A.7_(Homo_sapiens)\n",
"Building cH2A.8_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A.9_(Homo_sapiens)\n",
"Building cH2A_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A.1_(Mus_musculus)\n",
"Building cH2A_(Mus_musculus)\n",
"Building cH2A_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A_(Vertebrata)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A_(Animals)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A_(Fungi)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A_(Chlorophyta)\n",
"Building cH2A_(Embryophyta)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A_(Plants)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A_(Protists)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2A\n",
"Ошибка выполнения скрипта: \n",
"Building gH2A\n",
"Building H2A.J_(Homo_sapiens)\n",
"Building H2A.J\n",
Expand All @@ -2054,60 +2035,38 @@
"Building H2A.X_(Homo_sapiens)\n",
"Building H2A.X_(Mus_musculus)\n",
"Building H2A.X_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.X_(Vertebrata)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.X_(Animals)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.X_(Fungi)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.X_(Plants)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.X_(Protists)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.X\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z.1_(Homo_sapiens)\n",
"Building H2A.Z.1_(Primates)\n",
"Building H2A.Z.1_(Chordata)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z.2.s1_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z.2.s1_(Primates)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z.2.s2_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z.2.s2_(Primates)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z.2_(Primates)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z.2_(Chordata)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Z\n",
"Ошибка выполнения скрипта: \n",
"Building macroH2A.1.s1_(Homo_sapiens)\n",
"Building macroH2A.1.s1_(Mammalia)\n",
"Building macroH2A.1.s2_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building macroH2A.1.s2_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building macroH2A.1_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building macroH2A.2_(Homo_sapiens)\n",
"Building macroH2A.2_(Mammalia)\n",
"Building macroH2A\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.B.1_(Homo_sapiens)\n",
"Building H2A.B.2_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.B_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.B.1_(Mus_musculus)\n",
"Building H2A.B.2_(Mus_musculus)\n",
"Building H2A.B.3_(Mus_musculus)\n",
"Building H2A.B_(Mus_musculus)\n",
"Building H2A.B\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.L.1_(Homo_sapiens)\n",
"Building H2A.L.3_(Homo_sapiens)\n",
"Building H2A.L_(Homo_sapiens)\n",
Expand All @@ -2116,56 +2075,39 @@
"Building H2A.L.3_(Mus_musculus)\n",
"Building H2A.L_(Mus_musculus)\n",
"Building H2A.L\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.P_(Homo_sapiens)\n",
"Building H2A.P_(Mus_musculus)\n",
"Building H2A.P\n",
"Ошибка выполнения скрипта: \n",
"Building H2A.Q\n",
"Building short_H2A\n",
"Ошибка выполнения скрипта: \n",
"Building H2A\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B.10_(Homo_sapiens)\n",
"Building cH2B.11_(Homo_sapiens)\n",
"Building cH2B.12_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B.13_(Homo_sapiens)\n",
"Building cH2B.14_(Homo_sapiens)\n",
"Building cH2B.1_(Homo_sapiens)\n",
"Building cH2B.2_(Homo_sapiens)\n",
"Building cH2B.3_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B.4_(Homo_sapiens)\n",
"Building cH2B.5_(Homo_sapiens)\n",
"Building cH2B.6_(Homo_sapiens)\n",
"Building cH2B.7_(Homo_sapiens)\n",
"Building cH2B.8_(Homo_sapiens)\n",
"Building cH2B.9_(Homo_sapiens)\n",
"Building cH2B_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B.1_(Mus_musculus)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B.E_(Mus_musculus)\n",
"Building cH2B_(Mus_musculus)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Vertebrata)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Animals)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Fungi)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Chlorophyta)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Embryophyta)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Plants)\n",
"Ошибка выполнения скрипта: \n",
"Building cH2B_(Protists)\n",
"Building cH2B\n",
"Ошибка выполнения скрипта: \n",
"Building CS_H2B_(Echinoidea)\n",
"Building early_H2B_(Echinoidea)\n",
"Building gH2B\n",
Expand All @@ -2183,68 +2125,14 @@
"Building H2B.W\n",
"Building H2B.Z\n",
"Building late_H2B_(Echinoidea)\n",
"Ошибка выполнения скрипта: \n",
"Building sperm_H2B_(Echinoidea)\n",
"Ошибка выполнения скрипта: \n",
"Building H2B\n",
"Ошибка выполнения скрипта: \n",
"Building cenH3_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cenH3_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building cenH3_(Animals)\n",
"Ошибка выполнения скрипта: \n",
"Building cenH3_(Fungi)\n",
"Ошибка выполнения скрипта: \n",
"Building cenH3_(Plants)\n",
"Ошибка выполнения скрипта: \n",
"Building cenH3_(Eukarya)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3.1_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3.1_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3.2_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3.2_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3_(Vertebrata)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3_(Animals)\n",
"Ошибка выполнения скрипта: \n",
"Building cH3\n",
"Ошибка выполнения скрипта: \n",
"Building H3.3_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building H3.3_(Animals)\n",
"Ошибка выполнения скрипта: \n",
"Building H3.3\n",
"Ошибка выполнения скрипта: \n",
"Building H3.Y.1_(Homo_sapiens)\n",
"Building H3.Y.2_(Homo_sapiens)\n",
"Building H3.Y_(Homo_sapiens)\n",
"Building H3.Y_(Primates?)\n",
"Ошибка выполнения скрипта: \n",
"Building H3.3-like_(Animals)\n",
"Ошибка выполнения скрипта: \n",
"Building H3.3-like?\n",
"Ошибка выполнения скрипта: \n",
"Building H3.4_(Homo_sapiens)\n",
"Building H3.4_(Mammalia)\n",
"Ошибка выполнения скрипта: \n",
"Building H3.5_(Homo_sapiens)\n",
"Building H3.5_(Hominidae)\n",
"Ошибка выполнения скрипта: \n",
"Building H3\n",
"Ошибка выполнения скрипта: \n",
"Building cH4_(Homo_sapiens)\n",
"Ошибка выполнения скрипта: \n",
"Building cH4\n",
"Ошибка выполнения скрипта: \n",
"Building H4\n",
"Ошибка выполнения скрипта: \n"
"Building cenH3_(Eukarya)\n"
]
}
],
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/CS_H2B_Echinoidea.fasta
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@@ -1,4 +1,4 @@
>CS_H2B_(Echinoidea)_Psammechinus_miliaris_AAB48832.1 organism=Psammechinus miliaris phylum=Echinodermata class=Echinoidea
>CS_H2B_Echinoidea_Psammechinus_miliaris_AAB48832.1 organism=Psammechinus miliaris phylum=Echinodermata class=Echinoidea
MPAKGAATKGEKKQAVKSKAMASSRTGDKKRRRRRLESYNIYIYKVLKQVHPDTGISSKA
MSIMNSFVNDIFERIAAEASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAV
TKYTTSR
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/CS_H2B_Echinoidea.tree
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@@ -1 +1 @@
(CS_H2B_:0.000000000)Consensus;
(CS_H2B_Echinoidea_Psammechinus_miliaris_AAB48832.1:0.000000000)Consensus;
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.0.fasta
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Expand Up @@ -68,7 +68,7 @@ MADTDAAPAAPAPSTPKKA-------AKKKASKPKTPASHPKYSDMIASALESLKEKKGS
SRQAILKYVKANFTVGDN-ANVHIKQALKRGVTSGQLRHVKGSGASGSFLLAEKTK----
-------TPKKAAAKKATPKKKPAAKK---TKKPA---------AKK-ATKKPAKKP--A
AKKKVAKPAAKKAAKPVAKKATPKKKVVKKAAKGKGKKK
>H1.0_(Homo_sapiens)_Homo_sapiens_NP_005309.1 organism=Homo sapiens phylum=Chordata class=Mammalia
>H1.0_Homo_sapiens_Homo_sapiens_NP_005309.1 organism=Homo sapiens phylum=Chordata class=Mammalia
--MTENSTSAPAA-------------KPKRAKASKKSTDHPKYSDMIVAAIQAEKNRAGS
SRQSIQKYIKSHYKVGEN-ADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDEPKKS
VAFK---KTKKEIKKVATPKKASKPKKAA-SKAPTKKPKATP--VKK-AKKKLAATPKKA
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.0.tree
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@@ -1 +1 @@
(H1.0_Bos_taurus_NP_001069955.1:0.013101340,(H1.0_Mus_musculus_NP_032223.2:0.013120028,H1.0_Rattus_norvegicus_NP_036710.1:0.000000005):0.019809633,((H1.0_Pongo_abelii_NP_001127680.1:0.0,H1.0_:0.0):0.028886719,((H1.0_Gallus_gallus_NP_001038138.1:0.033002726,(H1.0_Cairina_moschata_P06513.2:0.044285983,H1.0_Taeniopygia_guttata_XP_004175972.1:0.115980380):0.029294990):0.276255134,(H1.0_Xenopus_tropicalis_NP_998836.1:0.087395517,(((H1.0_Salmo_salar_ACH70944.1:0.0,H1.0_Salmo_salar_ACM09660.1:0.0):0.000000005,(H1.0_Esox_lucius_XP_010887142.1:0.068836793,H1.0_Salmo_salar_ACM08534.1:0.000000005):0.006253578):0.202185257,(H1.0_Thalassiosira_pseudonana_CCMP1335_EED88841.1:0.797801036,H1.0_Strongylocentrotus_purpuratus_NP_999722.1:0.410499078):0.287712953):0.159271328):0.094548345):0.059113300):0.003970243)Consensus;
(H1.0_Bos_taurus_NP_001069955.1:0.013101340,(H1.0_Mus_musculus_NP_032223.2:0.013120028,H1.0_Rattus_norvegicus_NP_036710.1:0.000000005):0.019809633,((H1.0_Pongo_abelii_NP_001127680.1:0.0,H1.0_Homo_sapiens_Homo_sapiens_NP_005309.1:0.0):0.028886719,((H1.0_Gallus_gallus_NP_001038138.1:0.033002726,(H1.0_Cairina_moschata_P06513.2:0.044285983,H1.0_Taeniopygia_guttata_XP_004175972.1:0.115980380):0.029294990):0.276255134,(H1.0_Xenopus_tropicalis_NP_998836.1:0.087395517,(((H1.0_Salmo_salar_ACH70944.1:0.0,H1.0_Salmo_salar_ACM09660.1:0.0):0.000000005,(H1.0_Esox_lucius_XP_010887142.1:0.068836793,H1.0_Salmo_salar_ACM08534.1:0.000000005):0.006253578):0.202185257,(H1.0_Thalassiosira_pseudonana_CCMP1335_EED88841.1:0.797801036,H1.0_Strongylocentrotus_purpuratus_NP_999722.1:0.410499078):0.287712953):0.159271328):0.094548345):0.059113300):0.003970243)Consensus;
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.0_Homo_sapiens.fasta
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@@ -1,4 +1,4 @@
>H1.0_(Homo_sapiens)_Homo_sapiens_NP_005309.1 organism=Homo sapiens phylum=Chordata class=Mammalia
>H1.0_Homo_sapiens_Homo_sapiens_NP_005309.1 organism=Homo sapiens phylum=Chordata class=Mammalia
MTENSTSAPAAKPKRAKASKKSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKV
GENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDEPKKSVAFKKTKKEIKKVATP
KKASKPKKAASKAPTKKPKATPVKKAKKKLAATPKKAKKPKTVKAKPVKASKPKKAKPVK
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.0_Homo_sapiens.tree
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@@ -1 +1 @@
(H1.0_:0.000000000)Consensus;
(H1.0_Homo_sapiens_Homo_sapiens_NP_005309.1:0.000000000)Consensus;
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.1.fasta
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@@ -1,4 +1,4 @@
>H1.1_(Homo_sapiens)_Homo_sapiens_NP_005316.1 organism=Homo sapiens phylum=Chordata class=Mammalia
>H1.1_Homo_sapiens_Homo_sapiens_NP_005316.1 organism=Homo sapiens phylum=Chordata class=Mammalia
MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV
SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK
PGASKVATKTKATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKV
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.1.tree
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@@ -1 +1 @@
(H1.1_:0.000000000)Consensus;
(H1.1_Homo_sapiens_Homo_sapiens_NP_005316.1:0.000000000)Consensus;
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.10.fasta
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Expand Up @@ -23,7 +23,7 @@ PAAKLKKLGVKKVSAAQ---K------NKKPKKASKPPAKS-PRKK--
QLVVDTIRKLGERNGSSLAKIYSEAKKVSWFDQQNGRTYLKYSIKALVQNDTLLQVKGVG
ANGSFRLNKKKLE-GLPYDKKP--PPAKPSSSSSNKKQQQQGPSSSPSKSHKKAKPKAKA
EKEKPKTSSAKAKSPKKSAAK------GKKMKKGAKPSVRKAPKSKKA
>H1.10_(Homo_sapiens)_Homo_sapiens_NP_006017.1 organism=Homo sapiens phylum=Chordata class=Mammalia
>H1.10_Homo_sapiens_Homo_sapiens_NP_006017.1 organism=Homo sapiens phylum=Chordata class=Mammalia
-MSVELEEALPVTTAEGMAKKVTKAG----------GSAALSPSKKRKNSKKKNQPGKYS
QLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTG
ANGSFKLNRKKLEGGGERRGAP--AAATAPAPTAH-KAKKAAPGAAGSRRADKKPARGQK
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.10.tree
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(H1.10_Xenopus_laevis_NP_001080265.1:0.245819464,H1.10_:0.449626547,(H1.10_Osmerus_mordax_ACO09903.1:0.289230809,((H1.10_Caligus_rogercresseyi_ACO10502.1:0.0,H1.10_Salmo_salar_ACM09455.1:0.0):0.035383967,H1.10_Oncorhynchus_mykiss_ACO07616.1:0.010927954):0.249210114):0.348541408)Consensus;
(H1.10_Xenopus_laevis_NP_001080265.1:0.245819464,H1.10_Homo_sapiens_Homo_sapiens_NP_006017.1:0.449626547,(H1.10_Osmerus_mordax_ACO09903.1:0.289230809,((H1.10_Caligus_rogercresseyi_ACO10502.1:0.0,H1.10_Salmo_salar_ACM09455.1:0.0):0.035383967,H1.10_Oncorhynchus_mykiss_ACO07616.1:0.010927954):0.249210114):0.348541408)Consensus;
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.10_Homo_sapiens.fasta
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>H1.10_(Homo_sapiens)_Homo_sapiens_NP_006017.1 organism=Homo sapiens phylum=Chordata class=Mammalia
>H1.10_Homo_sapiens_Homo_sapiens_NP_006017.1 organism=Homo sapiens phylum=Chordata class=Mammalia
MSVELEEALPVTTAEGMAKKVTKAGGSAALSPSKKRKNSKKKNQPGKYSQLVVETIRRLG
ERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRKK
LEGGGERRGAPAAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSHKKGAGAKK
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.10_Homo_sapiens.tree
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(H1.10_:0.000000000)Consensus;
(H1.10_Homo_sapiens_Homo_sapiens_NP_006017.1:0.000000000)Consensus;
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.1_Homo_sapiens.fasta
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>H1.1_(Homo_sapiens)_Homo_sapiens_NP_005316.1 organism=Homo sapiens phylum=Chordata class=Mammalia
>H1.1_Homo_sapiens_Homo_sapiens_NP_005316.1 organism=Homo sapiens phylum=Chordata class=Mammalia
MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV
SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK
PGASKVATKTKATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKV
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.1_Homo_sapiens.tree
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(H1.1_:0.000000000)Consensus;
(H1.1_Homo_sapiens_Homo_sapiens_NP_005316.1:0.000000000)Consensus;
2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.2.fasta
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>H1.2_(Homo_sapiens)_Homo_sapiens_NP_005310.1 organism=Homo sapiens phylum=Chordata class=Mammalia
>H1.2_Homo_sapiens_Homo_sapiens_NP_005310.1 organism=Homo sapiens phylum=Chordata class=Mammalia
MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
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2 changes: 1 addition & 1 deletion CURATED_SET/draft_seeds/H1.2.tree
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(H1.2_:0.000000000)Consensus;
(H1.2_Homo_sapiens_Homo_sapiens_NP_005310.1:0.000000000)Consensus;
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